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Spg026849 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026849
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold13:25455599..25466032
RNA-Seq ExpressionSpg026849
SyntenySpg026849
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038070.1 uncharacterized protein E6C27_scaffold36G002800 [Cucumis melo var. makuwa]3.5e-2629.1Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI
        SQ K  SIE+++E W +V RRKK+K +  +KESC + + +R  K+++ K KKK+R+ K V EE +DF  P   +TL ++FP R L D Q E LE+V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKT------------------------------------------------------------
        ++ +E++ + + SL+      D S  ++ DLLSLPQE KT                                                            
Subjt:  VDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKT------------------------------------------------------------

Query:  ------------------------------------------------------VEDVKAS---------------------------------------
                                                              + D+K+S                                       
Subjt:  ------------------------------------------------------VEDVKAS---------------------------------------

Query:  -DLKKGETSTSLVKP------------KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARA
         D+KK E  ++  K             +KKLL EG+++P +RKGLGYKSPEP+ ITR+ K KV D NHIT+EEVD  ++KE   QRTS F RI   VARA
Subjt:  -DLKKGETSTSLVKP------------KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARA

Query:  LV
        LV
Subjt:  LV

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.5e-2453.97Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST
        L   +KKLL+EG+S+P +RKGLGYKSPEP+RIT++GK KV DINHIT+EE D++  KE  +QR SVF RIR  VAR +VF+RL + E + E  Q   S  
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST

Query:  RSSIFRRLNMPVGEEDSTLSTPDVTR
        R S+FRRL     +E+ST      TR
Subjt:  RSSIFRRLNMPVGEEDSTLSTPDVTR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.5e-1640.3Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDD
        IE+++EGW +V  RKK++    ++ES  +++ +R  K+Q+ K KKK+ + K V  E  +F  P + +TLA++ P+ FL D Q E  E+V CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDD

Query:  DVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV
         +P  SL+      DLS F+++DLLSLPQE KT+
Subjt:  DVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.5e-2453.97Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST
        L   +KKLL+EG+S+P +RKGLGYKSPEP+RIT++GK KV DINHIT+EE D++  KE  +QR SVF RIR  VAR +VF+RL + E + E  Q   S  
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST

Query:  RSSIFRRLNMPVGEEDSTLSTPDVTR
        R S+FRRL     +E+ST      TR
Subjt:  RSSIFRRLNMPVGEEDSTLSTPDVTR

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]5.5e-2453.17Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST
        L   +KKLL+EG+S+P +RKGLGYKSPEP+RIT++GK KV DINHIT+EE D++  KE  +QR SVF RIR  VAR +VF+RL + E + E  Q   +  
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST

Query:  RSSIFRRLNMPVGEEDSTLSTPDVTR
        R S+FRRL     +E+ST      TR
Subjt:  RSSIFRRLNMPVGEEDSTLSTPDVTR

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]4.7e-0742.11Show/hide
Query:  DFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV
        +F  P + +TLA++ P+ FL   Q E  E+V CH ++  E++ +P  SL+      DLS F+++DLLSLPQE KT+
Subjt:  DFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]5.5e-2453.17Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST
        L   +KKLL+EG+S+P +RKGLGYKSPEP+RIT++GK KV DINHIT+EE D++  KE  +QR SVF RIR  VAR +VF+RL + E + E  Q   +  
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST

Query:  RSSIFRRLNMPVGEEDSTLSTPDVTR
        R S+FRRL     +E+ST      TR
Subjt:  RSSIFRRLNMPVGEEDSTLSTPDVTR

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.5e-1640.3Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDD
        IE+++EGW +V  RKK++    ++ES  +++ +R  K+Q+ K KKK+ + K V  E  +F  P + +TLA++ P+ FL D Q E  E+V CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDD

Query:  DVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV
         +P  SL+      DLS F+++DLLSLPQE KT+
Subjt:  DVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H1.3e-2350.36Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST
        L   +KKLL+EG+++P +RKGLGYKSPEP+RITR+GK KV D NHITV+EVD  +EKE   QRTS F RI   VARA VF+RL V E + +  Q T++  
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST

Query:  RSSIFRRLNMPVGEEDSTLSTPDVTRVEIIGNEVDDD
        R S F RL++   +   T   P + R+   G  V  D
Subjt:  RSSIFRRLNMPVGEEDSTLSTPDVTRVEIIGNEVDDD

A0A5A7SRA6 Ty3-gypsy retrotransposon protein1.0e-2345.83Show/hide
Query:  MKGSQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT
        ++ S+EK   IE+++EGW +V RRKK+K +   KESC +R+ +R  K+Q+ K KKK+R+ K V EE +DF  P + +TLA++FP RFL D Q E   +V 
Subjt:  MKGSQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV
        CH ++V+E++ +P  SL+       LS F++ DLLSLPQE KT+
Subjt:  CHIVDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV

A0A5A7T3Z3 Uncharacterized protein1.7e-2629.1Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI
        SQ K  SIE+++E W +V RRKK+K +  +KESC + + +R  K+++ K KKK+R+ K V EE +DF  P   +TL ++FP R L D Q E LE+V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKT------------------------------------------------------------
        ++ +E++ + + SL+      D S  ++ DLLSLPQE KT                                                            
Subjt:  VDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKT------------------------------------------------------------

Query:  ------------------------------------------------------VEDVKAS---------------------------------------
                                                              + D+K+S                                       
Subjt:  ------------------------------------------------------VEDVKAS---------------------------------------

Query:  -DLKKGETSTSLVKP------------KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARA
         D+KK E  ++  K             +KKLL EG+++P +RKGLGYKSPEP+ ITR+ K KV D NHIT+EEVD  ++KE   QRTS F RI   VARA
Subjt:  -DLKKGETSTSLVKP------------KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARA

Query:  LV
        LV
Subjt:  LV

A0A5A7TY01 Ty3-gypsy retrotransposon protein1.3e-2344.44Show/hide
Query:  MKGSQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT
        ++ S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+Q+ K KKK+R+ K V EE +DF  P + +T+A+ FP RFL D Q E  E++T
Subjt:  MKGSQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV
        CH ++  E++ +P+ SL+      +LS F++ DLLSLPQE KT+
Subjt:  CHIVDVVEDDDVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTV

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.3e-2353.17Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST
        L   +KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI   VARA VF+RL + E K +  Q T++  
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESVDQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSST

Query:  RSSIFRRLNMPVGEEDSTLSTPDVTR
        R S F+RL +   EE     T   T+
Subjt:  RSSIFRRLNMPVGEEDSTLSTPDVTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCTTG
CCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGAAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCCTGTTGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGTTCCTTGGATACGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAACTGTTGAAGATGT
GAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGAAGAAGCTTCTAAAAGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTTGGAT
ATAAGTCACCCGAGCCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTC
GACCAACGAACTTCTGTTTTTAGGCGCATCAGGCAACCAGTTGCTCGTGCTTTAGTCTTTCAGAGGTTAATTGTGAATGAAACAAAAGAAGAAAGTGCACAACCTACCAA
TAGCTCCACTCGATCTTCAATTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGATAGTACACTTTCAACTCCGGATGTCACGCGTGTTGAAATCATTGGAAATGAAG
TTGATGACGACCGTTGTAGACGAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCAC
TGTAGGCAAATCTGGAGTGCATCACTGAAGCCAAGTTTGGTGACTACCCTTGCAGGCTACTCAGATCACCCAATAAAATACGGGACTGCAAAGAGGCACGAAGGAAGGTT
ATTGCTCGAATTCAAGGCCTATACAAAGGAGAAAATACATGAGCATTTGAGGGTTAGAGAAGGTAGAGTCCAGAGCAGTCTCCCAAAGTCCAGAGTCTTCAGAAGTCAGA
GAGTCCAAAGAATTCAGAAGATCCAAGATTCAGAATTCGGTCATCTTAAGACTCAGAAGATCCAACGACTGGAAGACTCCAAAGAATCAATCGTTTCTTCATCAAGATAC
AAGTTGAAGATTCAACCTTCCTCCGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCTTG
CCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGAAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCCTGTTGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGTTCCTTGGATACGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAACTGTTGAAGATGT
GAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGAAGAAGCTTCTAAAAGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTTGGAT
ATAAGTCACCCGAGCCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTC
GACCAACGAACTTCTGTTTTTAGGCGCATCAGGCAACCAGTTGCTCGTGCTTTAGTCTTTCAGAGGTTAATTGTGAATGAAACAAAAGAAGAAAGTGCACAACCTACCAA
TAGCTCCACTCGATCTTCAATTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGATAGTACACTTTCAACTCCGGATGTCACGCGTGTTGAAATCATTGGAAATGAAG
TTGATGACGACCGTTGTAGACGAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCAC
TGTAGGCAAATCTGGAGTGCATCACTGAAGCCAAGTTTGGTGACTACCCTTGCAGGCTACTCAGATCACCCAATAAAATACGGGACTGCAAAGAGGCACGAAGGAAGGTT
ATTGCTCGAATTCAAGGCCTATACAAAGGAGAAAATACATGAGCATTTGAGGGTTAGAGAAGGTAGAGTCCAGAGCAGTCTCCCAAAGTCCAGAGTCTTCAGAAGTCAGA
GAGTCCAAAGAATTCAGAAGATCCAAGATTCAGAATTCGGTCATCTTAAGACTCAGAAGATCCAACGACTGGAAGACTCCAAAGAATCAATCGTTTCTTCATCAAGATAC
AAGTTGAAGATTCAACCTTCCTCCGTCTGA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDD
DVPASSLDTMASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVEEVDDSKEKESV
DQRTSVFRRIRQPVARALVFQRLIVNETKEESAQPTNSSTRSSIFRRLNMPVGEEDSTLSTPDVTRVEIIGNEVDDDRCRRDTTVIKVTGLDRLLRSPNKMGTGLAGVHH
CRQIWSASLKPSLVTTLAGYSDHPIKYGTAKRHEGRLLLEFKAYTKEKIHEHLRVREGRVQSSLPKSRVFRSQRVQRIQKIQDSEFGHLKTQKIQRLEDSKESIVSSSRY
KLKIQPSSV