; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026872 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026872
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold13:23908776..23916273
RNA-Seq ExpressionSpg026872
SyntenySpg026872
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032650.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3152.3Show/hide
Query:  LYIESSVTLNEFFSKTF-HKKKKENFATSYC-------ID-----MKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAF
        L +  S+TL EF  K+F     +E F  + C       +D      KEV+NS +  QRTSVFDR+KPSTT   +FQR+SM   EEENQC     TR S F
Subjt:  LYIESSVTLNEFFSKTF-HKKKKENFATSYC-------ID-----MKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAF

Query:  QRLSVSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        +RLS+STSKK R STS FDCLK+T+DQ +R++ +L+ K F E N+D K+HS +PS MKRK FV INTEGSL  K
Subjt:  QRLSVSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-3253.25Show/hide
Query:  SVTLNEFFSKTF---HKKKKENFATSYCIDM----------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV
        S+TL EFF ++F   H ++     T +   +          +EVDNS + +QRTSVFDR+KP TT  S+FQR+SM   EEENQC  ST  R SAF+RLS+
Subjt:  SVTLNEFFSKTF---HKKKKENFATSYCIDM----------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV

Query:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        STSKK R STS FD LK+T+DQ +R+M +L+ K F E N+D K+HS +PSRMKRK  V INTEGSL  K
Subjt:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3152.07Show/hide
Query:  SVTLNEFFSKTFHKKKKENFA------TSYCIDM-------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV
        S+TL EF S++F +   E         T+  +++       +EVDNS + +QRTSVFDR+KP TT  S+FQR+SM   EE+NQC  ST  R SAF+RLS+
Subjt:  SVTLNEFFSKTFHKKKKENFA------TSYCIDM-------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV

Query:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        STSKK R STS FD LK+T+DQ +R+M +L+ K F E N+D K+H+ +PSRMKRK  V INTEGSL  K
Subjt:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-3252.94Show/hide
Query:  SVTLNEFFSKTF--------------HKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLS
        S+TL EFF ++F              H      F  +Y    +EVDNS + +QRTSVFDR+KP TT  S+FQR+SM   EE+NQC  ST TR SAF+RLS
Subjt:  SVTLNEFFSKTF--------------HKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLS

Query:  VSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        +STSKK R STS FD +K+ +DQ +R+M +L+ K F E N+D K+HS +PSRMKRK FV INTEGSL  K
Subjt:  VSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3152.07Show/hide
Query:  SVTLNEFFSKTFHKKKKENFA------TSYCIDM-------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV
        S+TL EF S++F +   E         T+  +++       +EVDNS + +QRTSVFDR+KP TT  S+FQR+SM   EE+NQC  ST  R SAF+RLS+
Subjt:  SVTLNEFFSKTFHKKKKENFA------TSYCIDM-------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV

Query:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        STSKK R STS FD LK+T+DQ +R+M +L+ K F E N+D K+H+ +PSRMKRK  V INTEGSL  K
Subjt:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

TrEMBL top hitse value%identityAlignment
A0A5A7SP56 Retrotransposon gag protein5.2e-3252.3Show/hide
Query:  LYIESSVTLNEFFSKTF-HKKKKENFATSYC-------ID-----MKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAF
        L +  S+TL EF  K+F     +E F  + C       +D      KEV+NS +  QRTSVFDR+KPSTT   +FQR+SM   EEENQC     TR S F
Subjt:  LYIESSVTLNEFFSKTF-HKKKKENFATSYC-------ID-----MKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAF

Query:  QRLSVSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        +RLS+STSKK R STS FDCLK+T+DQ +R++ +L+ K F E N+D K+HS +PS MKRK FV INTEGSL  K
Subjt:  QRLSVSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

A0A5A7TGM1 Retrotransposon gag protein6.8e-3252.94Show/hide
Query:  SVTLNEFFSKTF--------------HKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLS
        S+TL EFF ++F              H      F  +Y    +EVDNS + +QRTSVFDR+KP TT  S+FQR+S+   EEENQC  ST TR SAF+ LS
Subjt:  SVTLNEFFSKTF--------------HKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLS

Query:  VSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        +STSKK R STS FD LK+ +DQ +R+M +L+VK F E N+D K+HS +PSRMKRK  V INTEGSL  K
Subjt:  VSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

A0A5A7TL86 Retrotransposon gag protein6.8e-3250Show/hide
Query:  SVTLNEFFSKTF---HKKKKENFATSYCIDM----------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV
        S+TL EFF ++F   H K+       + I +          +EVDNS + ++RTSVFDR+KPSTT  S+FQR+SM   EEENQC  S ST+  AF+RLS+
Subjt:  SVTLNEFFSKTF---HKKKKENFATSYCIDM----------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV

Query:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDK-KLHSSIPSRMKRKYFVLINTEGSLKFKGS-HVFLPPSSK
        STSKK R STS FD LK+T+D+ +R+M   + KLF E NND  K+H+ +PSRMKRK FV I+T+GSL  K    +F  P++K
Subjt:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDK-KLHSSIPSRMKRKYFVLINTEGSLKFKGS-HVFLPPSSK

A0A5A7TQ06 Retrotransposon gag protein1.1e-3253.25Show/hide
Query:  SVTLNEFFSKTF---HKKKKENFATSYCIDM----------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV
        S+TL EFF ++F   H ++     T +   +          +EVDNS + +QRTSVFDR+KP TT  S+FQR+SM   EEENQC  ST  R SAF+RLS+
Subjt:  SVTLNEFFSKTF---HKKKKENFATSYCIDM----------KEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLSV

Query:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        STSKK R STS FD LK+T+DQ +R+M +L+ K F E N+D K+HS +PSRMKRK  V INTEGSL  K
Subjt:  STSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

A0A5D3BLW3 Retrotransposon gag protein8.1e-3352.94Show/hide
Query:  SVTLNEFFSKTF--------------HKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLS
        S+TL EFF ++F              H      F  +Y    +EVDNS + +QRTSVFDR+KP TT  S+FQR+SM   EE+NQC  ST TR SAF+RLS
Subjt:  SVTLNEFFSKTF--------------HKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAFQRLS

Query:  VSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK
        +STSKK R STS FD +K+ +DQ +R+M +L+ K F E N+D K+HS +PSRMKRK FV INTEGSL  K
Subjt:  VSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCCGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCT
GGGGTGTACAAGTCAAATCAGAAACTCTATTTGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGATAAATTGGTTGGGAATCTTGTTTTCA
TTTCTTCAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCAAG
CTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAATCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCTCGGTGACTTTGAATGAATTCTTCTC
CAAAACTTTCCACAAGAAGAAAAAAGAAAACTTTGCAACTTCCTATTGCATCGACATGAAAGAAGTTGACAATTCCAAGAAGTGTGAACAAAGGACTTCTGTCTTCGATC
GCATGAAGCCTTCAACTACTCATCCTTCGATATTCCAAAGAATGAGTATGGTCGCGATAGAAGAAGAAAATCAATGTTCAGTGTCCACCTCCACTCGACCTTCAGCTTTC
CAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACTTTCAACATCTGTTTTTGATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGGT
GAAACTTTTCGATGAAGTAAACAACGACAAGAAACTTCATAGTAGCATCCCGTCACGTATGAAAAGGAAGTACTTTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCA
AAGGTTCTCACGTGTTCCTTCCTCCAAGTTCGAAGGTTGGTTGCTTCGCTGCAGTTTCCTTCCTTCATGTTAGTAGGCTCATTCAAAGTCGAGGTGCAATTCCTTCCTCC
AAGTCCGAAGGTTCTTACGTTGCTTCGACTGCAATTTCTTCCTCCAAGTTCGAAGGGCTCCTCAAAGTCCGAAGCTGCTTTTATCAAAGTGACTGGTCTAGACAGGTGGT
GAAATCACTGCAAGTGAAGTTGATGACGATCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGCAAGTCGCCGGCGCCGGCTGTCGGAGACCACCGCT
TGCCAGCGATGGGCCGTCGCTGGCGTTTTTTTTCCTCCTCTTCTTTGTCGCGTGGGTCTCCGTTTCAAAGGCATCTTCTCCTCTTCTTCTTCGCTCGCCAGATTTCGACT
TTGGAGAGCTTGAAAACCGAAGGTATCGAGTTTAGATCTGGAGATTGCGTTCGGATCTGGAACCCAGATTCTTCGCGATTCGAAGGGGTGGGTCTGAAACGCAGCAGTTT
GAAGGCTGAAACGCTGGGGTTTGGATCTGTGTTGTTGGAGGATGCTTGTGGGTCTCGATTTGTGGGTCTTAAGGCTCTTGGAGGAAGTTGTTGGCCCACGGCGAAGAAGA
GAAAAGAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCCGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCT
GGGGTGTACAAGTCAAATCAGAAACTCTATTTGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGATAAATTGGTTGGGAATCTTGTTTTCA
TTTCTTCAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCAAG
CTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAATCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCTCGGTGACTTTGAATGAATTCTTCTC
CAAAACTTTCCACAAGAAGAAAAAAGAAAACTTTGCAACTTCCTATTGCATCGACATGAAAGAAGTTGACAATTCCAAGAAGTGTGAACAAAGGACTTCTGTCTTCGATC
GCATGAAGCCTTCAACTACTCATCCTTCGATATTCCAAAGAATGAGTATGGTCGCGATAGAAGAAGAAAATCAATGTTCAGTGTCCACCTCCACTCGACCTTCAGCTTTC
CAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACTTTCAACATCTGTTTTTGATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGGT
GAAACTTTTCGATGAAGTAAACAACGACAAGAAACTTCATAGTAGCATCCCGTCACGTATGAAAAGGAAGTACTTTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCA
AAGGTTCTCACGTGTTCCTTCCTCCAAGTTCGAAGGTTGGTTGCTTCGCTGCAGTTTCCTTCCTTCATGTTAGTAGGCTCATTCAAAGTCGAGGTGCAATTCCTTCCTCC
AAGTCCGAAGGTTCTTACGTTGCTTCGACTGCAATTTCTTCCTCCAAGTTCGAAGGGCTCCTCAAAGTCCGAAGCTGCTTTTATCAAAGTGACTGGTCTAGACAGGTGGT
GAAATCACTGCAAGTGAAGTTGATGACGATCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGCAAGTCGCCGGCGCCGGCTGTCGGAGACCACCGCT
TGCCAGCGATGGGCCGTCGCTGGCGTTTTTTTTCCTCCTCTTCTTTGTCGCGTGGGTCTCCGTTTCAAAGGCATCTTCTCCTCTTCTTCTTCGCTCGCCAGATTTCGACT
TTGGAGAGCTTGAAAACCGAAGGTATCGAGTTTAGATCTGGAGATTGCGTTCGGATCTGGAACCCAGATTCTTCGCGATTCGAAGGGGTGGGTCTGAAACGCAGCAGTTT
GAAGGCTGAAACGCTGGGGTTTGGATCTGTGTTGTTGGAGGATGCTTGTGGGTCTCGATTTGTGGGTCTTAAGGCTCTTGGAGGAAGTTGTTGGCCCACGGCGAAGAAGA
GAAAAGAGAACTAA
Protein sequenceShow/hide protein sequence
MQSQPLPDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGCTSQIRNSIWVTEKLESVLSDFGAFLDKLVGNLVFISSDIEPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIK
LPVPDTLPTSAESSRSISSTWLELYIESSVTLNEFFSKTFHKKKKENFATSYCIDMKEVDNSKKCEQRTSVFDRMKPSTTHPSIFQRMSMVAIEEENQCSVSTSTRPSAF
QRLSVSTSKKSRLSTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKYFVLINTEGSLKFKGSHVFLPPSSKVGCFAAVSFLHVSRLIQSRGAIPSS
KSEGSYVASTAISSSKFEGLLKVRSCFYQSDWSRQVVKSLQVKLMTIVVTTPAGNYSHQSDCKSPAPAVGDHRLPAMGRRWRFFSSSSLSRGSPFQRHLLLFFFARQIST
LESLKTEGIEFRSGDCVRIWNPDSSRFEGVGLKRSSLKAETLGFGSVLLEDACGSRFVGLKALGGSCWPTAKKRKEN