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Spg026878 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026878
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:25042912..25047116
RNA-Seq ExpressionSpg026878
SyntenySpg026878
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]1.7e-1551.28Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY
        MQSQPLQNL A ++    LFGLSY EGTK     R+  QT  +   V++      V + N    +VEIELPVPDTLPTSAES RS+SNTW+ELY ES++ 
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY

Query:  VNVLFNVQKGQRVSLEE
                K Q+ SLEE
Subjt:  VNVLFNVQKGQRVSLEE

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-1545.86Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNV
        MQSQPLQNLGA ++   F     ++   +         S  L   E   V+KSN KLYLVEIELPVPDTL TSAESSRS+S+TW+ELY ESV+   +  V
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNV

Query:  LFNVQKGQRVSL------EEDDVRLLHTIFRAK
        +   ++ Q   L        +DV  LH +F AK
Subjt:  LFNVQKGQRVSL------EEDDVRLLHTIFRAK

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-1643.42Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVEL-----YI
        MQSQPLQNLGA ++    LFGL Y EGTK     R   QT  +   V++      V + N    +VEIELPVPDTLPTSAESS S+S+TW+EL     ++
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVEL-----YI

Query:  ESVYY--------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSV
        E  YY        ++++FNV  G    +  D+V  LH +F AK      G V
Subjt:  ESVYY--------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSV

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.7e-1548.06Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNPKLYLV----------------EIELPVPDTLPTSAESSRSSSN
        MQSQPLQNLGA ++    LFGLSY E TK     ++    +++        V+KS+ KLYLV                 IELPVPDTLPTSAESS S+S+
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNPKLYLV----------------EIELPVPDTLPTSAESSRSSSN

Query:  TWVELYIESVYYVNVLFNVQKGQRVSLEE
        TW+ELY ESV +V + +   KGQ+ SLEE
Subjt:  TWVELYIESVYYVNVLFNVQKGQRVSLEE

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.5e-1638.38Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNPKLYL--------------------------------VEIE
        MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   ++K N KLYL                                  IE
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNPKLYL--------------------------------VEIE

Query:  LPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSVET
        LPVPDTLPTSAESS S+S+TW+ELY ESV+              ++++FNV  G    +  DDV  LH +FRAK      G V T
Subjt:  LPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSVET

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.1e-1545.86Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNV
        MQSQPLQNLGA ++   F     ++   +         S  L   E   V+KSN KLYLVEIELPVPDTL TSAESSRS+S+TW+ELY ESV+   +  V
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNV

Query:  LFNVQKGQRVSL------EEDDVRLLHTIFRAK
        +   ++ Q   L        +DV  LH +F AK
Subjt:  LFNVQKGQRVSL------EEDDVRLLHTIFRAK

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.1e-1643.42Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVEL-----YI
        MQSQPLQNLGA ++    LFGL Y EGTK     R   QT  +   V++      V + N    +VEIELPVPDTLPTSAESS S+S+TW+EL     ++
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVEL-----YI

Query:  ESVYY--------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSV
        E  YY        ++++FNV  G    +  D+V  LH +F AK      G V
Subjt:  ESVYY--------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSV

A0A5D3CJX3 CCHC-type domain-containing protein3.6e-1638.38Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNPKLYL--------------------------------VEIE
        MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   ++K N KLYL                                  IE
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNPKLYL--------------------------------VEIE

Query:  LPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSVET
        LPVPDTLPTSAESS S+S+TW+ELY ESV+              ++++FNV  G    +  DDV  LH +FRAK      G V T
Subjt:  LPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQKGQRVSLEEDDVRLLHTIFRAKLKARIRGSVET

A0A5D3DIM8 Uncharacterized protein8.0e-1651.28Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY
        MQSQPLQNL A ++    LFGLSY EGTK     R+  QT  +   V++      V + N    +VEIELPVPDTLPTSAES RS+SNTW+ELY ES++ 
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK-----RIFEQTRRI-SGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY

Query:  VNVLFNVQKGQRVSLEE
                K Q+ SLEE
Subjt:  VNVLFNVQKGQRVSLEE

A0A5D3DWP3 Uncharacterized protein8.0e-1648.06Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNPKLYLV----------------EIELPVPDTLPTSAESSRSSSN
        MQSQPLQNLGA ++    LFGLSY E TK     ++    +++        V+KS+ KLYLV                 IELPVPDTLPTSAESS S+S+
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNPKLYLV----------------EIELPVPDTLPTSAESSRSSSN

Query:  TWVELYIESVYYVNVLFNVQKGQRVSLEE
        TW+ELY ESV +V + +   KGQ+ SLEE
Subjt:  TWVELYIESVYYVNVLFNVQKGQRVSLEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTG
CTGAAAGCTCCAGATCAAGCTCCAATACATGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGAAGGGTCAGCGGGTATCGTTAGAG
GAGGACGATGTCCGGTTGCTTCACACCATCTTTCGGGCTAAGCTAAAGGCGCGTATTCGAGGCAGCGTCGAGACGCTACCTGCACAGCGTCTCGACGCTGCGAGCTTTCC
AAATTTGTTAGGGCACTCAACGCTACAGCGTCGCGACGCTGTCGCTGGTCGGAATAGGGACAGCGTCGCGACGCTATCGGTACAGCGTCGCGACGCTGTGACGTCATCCA
ACTTGTCCGCCAAGAAATGGGACAGCGTCGCGACGCTGTGCGGTTTCCAGACCCAGCAGGCGCGGATTTGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTG
CTGAAAGCTCCAGATCAAGCTCCAATACATGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGAAGGGTCAGCGGGTATCGTTAGAG
GAGGACGATGTCCGGTTGCTTCACACCATCTTTCGGGCTAAGCTAAAGGCGCGTATTCGAGGCAGCGTCGAGACGCTACCTGCACAGCGTCTCGACGCTGCGAGCTTTCC
AAATTTGTTAGGGCACTCAACGCTACAGCGTCGCGACGCTGTCGCTGGTCGGAATAGGGACAGCGTCGCGACGCTATCGGTACAGCGTCGCGACGCTGTGACGTCATCCA
ACTTGTCCGCCAAGAAATGGGACAGCGTCGCGACGCTGTGCGGTTTCCAGACCCAGCAGGCGCGGATTTGGGCTTGA
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNPKLYLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQKGQRVSLE
EDDVRLLHTIFRAKLKARIRGSVETLPAQRLDAASFPNLLGHSTLQRRDAVAGRNRDSVATLSVQRRDAVTSSNLSAKKWDSVATLCGFQTQQARIWA