; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026879 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026879
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:25403687..25410956
RNA-Seq ExpressionSpg026879
SyntenySpg026879
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4303756.1 unnamed protein product [Prunus armeniaca]4.8e-1030.2Show/hide
Query:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL
        QW   +G+ R  K RN +       DP +    ++K +   R  + +L      PV      S  + PP   K+N DAAW+  +  GG+GW++RDS   L
Subjt:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL

Query:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM
        +C G +          +E+ +I  +L  C    A   L  II+ESDS + I +LN      S+++ +  ++++L+  +  VSF F PR  N  AH +A  
Subjt:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM

Query:  VT
        V+
Subjt:  VT

CAB4321714.1 unnamed protein product [Prunus armeniaca]6.3e-1029.7Show/hide
Query:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL
        QW   +G+ R  K RN +       DP +    ++K +   R  + +L      PV      S  + PP   K+N DAAW+  +  GG+GW++RDS   L
Subjt:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL

Query:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM
        +C G +          +E+ +I  +L  C    A   L  II+ESDS + I +LN      S+++ +  ++++L+  +  VSF F PR  N  AH +   
Subjt:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM

Query:  VT
        V+
Subjt:  VT

XP_008230243.1 PREDICTED: uncharacterized protein LOC103329537 [Prunus mume]1.1e-0927.75Show/hide
Query:  DPNQIIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSW--------KINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKS
        DP + + ++     E    +   K  V+P+   +     P +W        K+N DAAW+    CGG+GW++RD+ D L+C G +          +E+ +
Subjt:  DPNQIIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSW--------KINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKS

Query:  ITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARMVTTREYIGNFGIT
        I  +L   +      L  +I+ESD+ + I +L  +    S +K +  ++++L+  +  VSF F P+  N  AH +A  V+ +  I  FGIT
Subjt:  ITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARMVTTREYIGNFGIT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.8e-1238.35Show/hide
Query:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKI
        PP  NSWK+N +AAW      GG+GW++RD K  +I    + I+    I  LE+ +I + LR +  +   P   I +ESDSLEAI +L+ +  D +E+  
Subjt:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKI

Query:  LAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR
        L EE+ ++++ +  VS     RE+N  AH LAR
Subjt:  LAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.1e-1338.41Show/hide
Query:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPK-----IIIESDSLEAISILNHETIDL
        PP  NSWK+N DAAW      GG+GW++RD K  +I    + I+    I  LE+ +I + LR +  +   P+ +     I +ESDSLEAI +L+ +  D 
Subjt:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPK-----IIIESDSLEAISILNHETIDL

Query:  SEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR
        +E+  L EE+ +++E +  VS     RE+N  AH LAR
Subjt:  SEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134128.6e-1338.35Show/hide
Query:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKI
        PP  NSWK+N +AAW      GG+GW++RD K  +I    + I+    I  LE+ +I + LR +  +   P   I +ESDSLEAI +L+ +  D +E+  
Subjt:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKI

Query:  LAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR
        L EE+ ++++ +  VS     RE+N  AH LAR
Subjt:  LAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR

A0A6J1DSV1 uncharacterized protein LOC1110236081.0e-1338.41Show/hide
Query:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPK-----IIIESDSLEAISILNHETIDL
        PP  NSWK+N DAAW      GG+GW++RD K  +I    + I+    I  LE+ +I + LR +  +   P+ +     I +ESDSLEAI +L+ +  D 
Subjt:  PP--NSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPK-----IIIESDSLEAISILNHETIDL

Query:  SEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR
        +E+  L EE+ +++E +  VS     RE+N  AH LAR
Subjt:  SEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR

A0A6J5WPU6 Reverse transcriptase domain-containing protein2.3e-1030.2Show/hide
Query:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL
        QW   +G+ R  K RN +       DP +    ++K +   R  + +L      PV      S  + PP   K+N DAAW+  +  GG+GW++RDS   L
Subjt:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL

Query:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM
        +C G +          +E+ +I  +L  C    A   L  II+ESDS + I +LN      S+++ +  ++++L+  +  VSF F PR  N  AH +A  
Subjt:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM

Query:  VT
        V+
Subjt:  VT

A0A6J5XPQ2 RNase H domain-containing protein8.9e-1029.32Show/hide
Query:  QWTMCYGVARPLK-RNSSKIKASLPDPNQIIK-VMERSREEELNLFSGEKSPVRPKNQ---SSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL
        QW   +G+ R  K RNS        DP + +  ++++  E  +   + +  P++P +     S  + PP   K+N DAAW+  + CGG+GW++RDS   L
Subjt:  QWTMCYGVARPLK-RNSSKIKASLPDPNQIIK-VMERSREEELNLFSGEKSPVRPKNQ---SSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL

Query:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESN
        +C G +          +E+ +I  +L  C    +   L  +I+ESDS   IS+LN      S+++ +  ++++L+  +  VSF F PR  N
Subjt:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESN

A0A6J5YDN0 Uncharacterized protein3.0e-1029.7Show/hide
Query:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL
        QW   +G+ R  K RN +       DP +    ++K +   R  + +L      PV      S  + PP   K+N DAAW+  +  GG+GW++RDS   L
Subjt:  QWTMCYGVARPLK-RNSSKIKASLPDPNQ----IIKVMERSREEELNLFSGEKSPVRPKNQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSL

Query:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM
        +C G +          +E+ +I  +L  C    A   L  II+ESDS + I +LN      S+++ +  ++++L+  +  VSF F PR  N  AH +   
Subjt:  ICVGLKRIKENWPIKCLEMKSITDSL-RCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLARM

Query:  VT
        V+
Subjt:  VT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0724.46Show/hide
Query:  RNSSKIKASLPDPNQIIKVMERSREE---ELNLFSGEKSPVRPKNQSSHGRCPPNSW-KINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPI
        RN    K    D  ++++      EE      L      P   +N S   + PP  W K N DA W       G+GW++R+    ++ +G + +     +
Subjt:  RNSSKIKASLPDPNQIIKVMERSREE---ELNLFSGEKSPVRPKNQSSHGRCPPNSW-KINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPI

Query:  KCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR
           E++++      +L  +R    +II ESD+   +++LN +      ++   E++++LL     V F F PR  N  A  +AR
Subjt:  KCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEEVKKLLELVGSVSFTFRPRESNCEAHLLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGCTTGCAGCTCGCTCCGATCAAAGACTCATTCGAGTCATGAAGGATCCATCCCACTCCTCCTTCGTTCAATTTCTTGCTCCAAGTAGCAACGATATTGATCT
TCCACGAATTCGGCTCCGACGGGCCACCTATGGTGACTCGGTTGGAAAAAGGAGGAATCAATGGACCATGTGTTATGGAGTTGCAAGACCTCTAAAAAGGAATTCATCAA
AAATCAAAGCCAGCTTGCCAGACCCAAATCAAATCATCAAAGTAATGGAGCGAAGTAGAGAAGAAGAGTTAAACCTGTTCAGTGGCGAGAAGAGTCCCGTGAGGCCAAAG
AACCAATCGAGTCATGGGCGTTGCCCCCCCAATTCTTGGAAGATCAACCCAGACGCGGCGTGGGCTGAAAGCAAAGGTTGCGGCGGGTTAGGATGGTTAGTTCGTGACTC
CAAGGATTCTCTGATCTGTGTGGGTCTTAAGAGAATCAAAGAAAATTGGCCGATCAAGTGTTTGGAGATGAAATCAATAACTGATAGTTTGAGATGCTTACTTGGAAAAG
CCAGAAATCCACTTCCAAAGATCATCATTGAATCAGACTCTCTCGAAGCCATATCCATTCTCAACCACGAGACCATCGATCTCTCGGAAGTGAAAATTTTGGCAGAGGAA
GTCAAGAAGCTACTGGAGCTCGTGGGCAGCGTCTCCTTTACCTTCCGACCGAGGGAATCAAACTGTGAAGCGCACCTTTTGGCGCGCATGGTGACTACCCGCGAATATAT
CGGTAATTTTGGCATAACAAAAATTCCAAAAGAAAGCAGCTTCGGACCCAATATAAATCGGCCCACGAAAAGGAAGAAGCCCAAGAGGAGAGCCAATATTCTCCTCGGCC
TCAGCATTGGACCGAGGCTGACTAGGCTTCAAAGCCCAAATGCCACCTGGGTCAATGTGGAGGGTCCTCCTAGGCCCGGGAGGGCGGAGTTCGTGAAGCAAGGATCAATC
TACGACTGGAAGAAGAAGAAAAACCCTAATCTAGAGGGAGATATAAAAGGTCCTTTGGGGACCCAGGTCACGTCTTCCCCAGATTCAATAAATTCACTGTTGGTGTCACA
TGAACATCAGGATGACCTAGGCAACTCGATCTCAATCCTGAGTGGATTATGGACTCCTGTTCACCAGGGGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGCCC
CTGCGTTTTTGGGCATATTTTGTAAATCTATTATCCTCTGTAAGTCCAGGTCTAGAATAGGATCTTTGATGATGAAAATCGATCAATATCGCTGCTGTTCGAGGCCAGAA
TTGAGAATGAATCAGTGCTGGAATTGCCCAAAATCTGCCTCCAGACGCAGCAGCGTCGCGACGCTGTCGCGATTTCGCAAAACGGAGGAATCACGTGGAACGGATGAAAT
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGCTTGCAGCTCGCTCCGATCAAAGACTCATTCGAGTCATGAAGGATCCATCCCACTCCTCCTTCGTTCAATTTCTTGCTCCAAGTAGCAACGATATTGATCT
TCCACGAATTCGGCTCCGACGGGCCACCTATGGTGACTCGGTTGGAAAAAGGAGGAATCAATGGACCATGTGTTATGGAGTTGCAAGACCTCTAAAAAGGAATTCATCAA
AAATCAAAGCCAGCTTGCCAGACCCAAATCAAATCATCAAAGTAATGGAGCGAAGTAGAGAAGAAGAGTTAAACCTGTTCAGTGGCGAGAAGAGTCCCGTGAGGCCAAAG
AACCAATCGAGTCATGGGCGTTGCCCCCCCAATTCTTGGAAGATCAACCCAGACGCGGCGTGGGCTGAAAGCAAAGGTTGCGGCGGGTTAGGATGGTTAGTTCGTGACTC
CAAGGATTCTCTGATCTGTGTGGGTCTTAAGAGAATCAAAGAAAATTGGCCGATCAAGTGTTTGGAGATGAAATCAATAACTGATAGTTTGAGATGCTTACTTGGAAAAG
CCAGAAATCCACTTCCAAAGATCATCATTGAATCAGACTCTCTCGAAGCCATATCCATTCTCAACCACGAGACCATCGATCTCTCGGAAGTGAAAATTTTGGCAGAGGAA
GTCAAGAAGCTACTGGAGCTCGTGGGCAGCGTCTCCTTTACCTTCCGACCGAGGGAATCAAACTGTGAAGCGCACCTTTTGGCGCGCATGGTGACTACCCGCGAATATAT
CGGTAATTTTGGCATAACAAAAATTCCAAAAGAAAGCAGCTTCGGACCCAATATAAATCGGCCCACGAAAAGGAAGAAGCCCAAGAGGAGAGCCAATATTCTCCTCGGCC
TCAGCATTGGACCGAGGCTGACTAGGCTTCAAAGCCCAAATGCCACCTGGGTCAATGTGGAGGGTCCTCCTAGGCCCGGGAGGGCGGAGTTCGTGAAGCAAGGATCAATC
TACGACTGGAAGAAGAAGAAAAACCCTAATCTAGAGGGAGATATAAAAGGTCCTTTGGGGACCCAGGTCACGTCTTCCCCAGATTCAATAAATTCACTGTTGGTGTCACA
TGAACATCAGGATGACCTAGGCAACTCGATCTCAATCCTGAGTGGATTATGGACTCCTGTTCACCAGGGGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGCCC
CTGCGTTTTTGGGCATATTTTGTAAATCTATTATCCTCTGTAAGTCCAGGTCTAGAATAGGATCTTTGATGATGAAAATCGATCAATATCGCTGCTGTTCGAGGCCAGAA
TTGAGAATGAATCAGTGCTGGAATTGCCCAAAATCTGCCTCCAGACGCAGCAGCGTCGCGACGCTGTCGCGATTTCGCAAAACGGAGGAATCACGTGGAACGGATGAAAT
TTAA
Protein sequenceShow/hide protein sequence
MNLLAARSDQRLIRVMKDPSHSSFVQFLAPSSNDIDLPRIRLRRATYGDSVGKRRNQWTMCYGVARPLKRNSSKIKASLPDPNQIIKVMERSREEELNLFSGEKSPVRPK
NQSSHGRCPPNSWKINPDAAWAESKGCGGLGWLVRDSKDSLICVGLKRIKENWPIKCLEMKSITDSLRCLLGKARNPLPKIIIESDSLEAISILNHETIDLSEVKILAEE
VKKLLELVGSVSFTFRPRESNCEAHLLARMVTTREYIGNFGITKIPKESSFGPNINRPTKRKKPKRRANILLGLSIGPRLTRLQSPNATWVNVEGPPRPGRAEFVKQGSI
YDWKKKKNPNLEGDIKGPLGTQVTSSPDSINSLLVSHEHQDDLGNSISILSGLWTPVHQGLSFDLYGEKSAAAPAFLGIFCKSIILCKSRSRIGSLMMKIDQYRCCSRPE
LRMNQCWNCPKSASRRSSVATLSRFRKTEESRGTDEI