; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026883 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026883
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:26398340..26399271
RNA-Seq ExpressionSpg026883
SyntenySpg026883
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1655.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGGP GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG

Query:  V
        V
Subjt:  V

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]6.2e-1250.96Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---STFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS   +    G      +S+E       DDV WLHA+FR K  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---STFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGP

Query:  EGGV
         GGV
Subjt:  EGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-1242.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQWVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTS E   S+SS+  +                          EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQWVSLEEDDVRW

Query:  LHAIFRTKLAGGPEGGVT--VKMIDFDIMLKQKK
        LHA+FR K AGGPEGGVT  V +   D++ ++KK
Subjt:  LHAIFRTKLAGGPEGGVT--VKMIDFDIMLKQKK

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.3e-1254.35Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTS ESS S+S S         +  DDV WLH++FR K A GP GGVT
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1655.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGGP GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase2.0e-1655.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGGP GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG

Query:  V
        V
Subjt:  V

A0A5D3BMJ4 Retrotrans_gag domain-containing protein3.0e-1250.96Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---STFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS   +    G      +S+E       DDV WLHA+FR K  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---STFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGP

Query:  EGGV
         GGV
Subjt:  EGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.3e-1242.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQWVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTS E   S+SS+  +                          EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQWVSLEEDDVRW

Query:  LHAIFRTKLAGGPEGGVT--VKMIDFDIMLKQKK
        LHA+FR K AGGPEGGVT  V +   D++ ++KK
Subjt:  LHAIFRTKLAGGPEGGVT--VKMIDFDIMLKQKK

A0A5D3CU23 Retrotrans_gag domain-containing protein6.1e-1354.35Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTS ESS S+S S         +  DDV WLH++FR K A GP GGVT
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT

A0A5D3DX39 Reverse transcriptase2.0e-1655.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGGP GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAG
CTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTG
TGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAG
CTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTG
TGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVTVKMIDFDIMLKQKK