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Spg026891 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026891
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:26314490..26319100
RNA-Seq ExpressionSpg026891
SyntenySpg026891
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.9e-2649.04Show/hide
Query:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYI
        MQSQ LQNLGA ++    LFGL Y EGTKRPRGNR+SL +    + ++   F        R     N   VEIELPVPDTLPTSAESS ++SSTW+EL  
Subjt:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYI

Query:  ESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGV
        E VH+             ++++FNV  G    +  D+V WL+A+F AK AGGPGGGV
Subjt:  ESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.4e-2139.29Show/hide
Query:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTK------RPRG---------------NRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHL----------
        MQSQ LQNLGA ++    LF LSY EGTK      +P G               +   L            +   G+ RG R  + T  L          
Subjt:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTK------RPRG---------------NRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHL----------

Query:  -------GVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT
                V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  -------GVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1848.82Show/hide
Query:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV
        RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G   
Subjt:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV

Query:  SLEEDDVRWLYAIFRAKLAGGPGGGVT
         +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  SLEEDDVRWLYAIFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.8e-2141.05Show/hide
Query:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKR--------------------------------PRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNH
        MQSQ LQNLGA ++    LF LSY EGTK                                 PRGNR SL +    + ++       +F      V  ++
Subjt:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKR--------------------------------PRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNH

Query:  LGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT
          V IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  LGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.1e-1848.82Show/hide
Query:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV
        RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G   
Subjt:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV

Query:  SLEEDDVRWLYAIFRAKLAGGPGGGVT
         +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  SLEEDDVRWLYAIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.3e-2649.04Show/hide
Query:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYI
        MQSQ LQNLGA ++    LFGL Y EGTKRPRGNR+SL +    + ++   F        R     N   VEIELPVPDTLPTSAESS ++SSTW+EL  
Subjt:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYI

Query:  ESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGV
        E VH+             ++++FNV  G    +  D+V WL+A+F AK AGGPGGGV
Subjt:  ESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein6.5e-2239.29Show/hide
Query:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTK------RPRG---------------NRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHL----------
        MQSQ LQNLGA ++    LF LSY EGTK      +P G               +   L            +   G+ RG R  + T  L          
Subjt:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTK------RPRG---------------NRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHL----------

Query:  -------GVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT
                V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  -------GVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase5.2e-1948.82Show/hide
Query:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV
        RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G   
Subjt:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV

Query:  SLEEDDVRWLYAIFRAKLAGGPGGGVT
         +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  SLEEDDVRWLYAIFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein8.5e-2241.05Show/hide
Query:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKR--------------------------------PRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNH
        MQSQ LQNLGA ++    LF LSY EGTK                                 PRGNR SL +    + ++       +F      V  ++
Subjt:  MQSQTLQNLGAKLSTSGFLFGLSYTEGTKR--------------------------------PRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNH

Query:  LGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT
          V IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  LGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein5.2e-1948.82Show/hide
Query:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV
        RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G   
Subjt:  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRV

Query:  SLEEDDVRWLYAIFRAKLAGGPGGGVT
         +  DDV WL+A+FRAK  GGPGGGVT
Subjt:  SLEEDDVRWLYAIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGACATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGACCAAGAGGAAATAGGTCGAG
TCTACTGTCGCAACGTCATTGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCGAGGTGAGAGGTTTGGAGTCGCCACCAATCATCTTGGGGTAGAGATCG
AGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTAGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTC
AACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTTACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGTGC
ATTTCTTCAGCAAATCCTCCTCTATTTAAAGAGGAATCCTTTCACTCTTGAAGCCCCACAATTAGACAACAAGACAATCCCAATTAGAGTGGGATTTGGTCGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGACATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGACCAAGAGGAAATAGGTCGAG
TCTACTGTCGCAACGTCATTGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCGAGGTGAGAGGTTTGGAGTCGCCACCAATCATCTTGGGGTAGAGATCG
AGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTAGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTC
AACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTTACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGTGC
ATTTCTTCAGCAAATCCTCCTCTATTTAAAGAGGAATCCTTTCACTCTTGAAGCCCCACAATTAGACAACAAGACAATCCCAATTAGAGTGGGATTTGGTCGCTAA
Protein sequenceShow/hide protein sequence
MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF
NVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVTCAFLQQILLYLKRNPFTLEAPQLDNKTIPIRVGFGR