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Spg026898 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026898
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:23183923..23186039
RNA-Seq ExpressionSpg026898
SyntenySpg026898
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-3046.88Show/hide
Query:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----
        S  ++WV  V +      E+ R N+    TE+++  +                      PLSTLSVL DNDAVVSAG+APL +R   RW     PT    
Subjt:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----

Query:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        +  S  LVEI+LPVPD LPTSAESSRS+S+TW+ELY ESV +V + + V           + S  IVRGDDVCWLHA+FRAK  GGPGGGVT
Subjt:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]5.0e-3260.99Show/hide
Query:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY
        LSTLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEI+L VPDTLPTSAESS S+S             
Subjt:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY

Query:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY
                  S GIVRGDDVCWLH VFRAK TGGPGG VTY
Subjt:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]5.0e-3260.99Show/hide
Query:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY
        LSTLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEI+L VPDTLPTSAESS S+S             
Subjt:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY

Query:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY
                  S GIVRGDDVCWLH VFRAK TGGPGG VTY
Subjt:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-3046.88Show/hide
Query:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----
        S  ++WV  V +      E+ R N+    TE+++  +                      PLSTLSVL DNDAVVSAG+APL +R   RW     PT    
Subjt:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----

Query:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        +  S  LVEI+LPVPD LPTSAESSRS+S+TW+ELY ESV +V + + V           + S  IVRGDDVCWLHA+FRAK  GGPGGGVT
Subjt:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]7.0e-4245.65Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFEL----------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E           
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFEL----------

Query:  --HRRNQEVRVTEKLESVLSDFGAFLG-KLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPL----------HRRISKRWLYWACPTQRRSVMLVEIK
          +R + +    +K+E  +      L  +L G +        PLSTLSVLRDNDAVVS G+             H  +    +             +EI+
Subjt:  --HRRNQEVRVTEKLESVLSDFGAFLG-KLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPL----------HRRISKRWLYWACPTQRRSVMLVEIK

Query:  LPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        L VPDTLPTSAESS S+S+TW+E   E  Y  + +   S     V S GIVR +DVCWLHAVFRAK+ GG GGGVT
Subjt:  LPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.3e-3046.88Show/hide
Query:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----
        S  ++WV  V +      E+ R N+    TE+++  +                      PLSTLSVL DNDAVVSAG+APL +R   RW     PT    
Subjt:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----

Query:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        +  S  LVEI+LPVPD LPTSAESSRS+S+TW+ELY ESV +V + + V           + S  IVRGDDVCWLHA+FRAK  GGPGGGVT
Subjt:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

A0A5A7VGQ5 Uncharacterized protein2.4e-3260.99Show/hide
Query:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY
        LSTLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEI+L VPDTLPTSAESS S+S             
Subjt:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY

Query:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY
                  S GIVRGDDVCWLH VFRAK TGGPGG VTY
Subjt:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY

A0A5D3BG85 Uncharacterized protein2.4e-3260.99Show/hide
Query:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY
        LSTLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEI+L VPDTLPTSAESS S+S             
Subjt:  LSTLSVLRDNDAVVSAG------------RAPLHRRISKRWLYWACPTQRRSVML----------VEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYY

Query:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY
                  S GIVRGDDVCWLH VFRAK TGGPGG VTY
Subjt:  VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTY

A0A5D3BTP3 Reverse transcriptase2.3e-3046.88Show/hide
Query:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----
        S  ++WV  V +      E+ R N+    TE+++  +                      PLSTLSVL DNDAVVSAG+APL +R   RW     PT    
Subjt:  SHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPT----

Query:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        +  S  LVEI+LPVPD LPTSAESSRS+S+TW+ELY ESV +V + + V           + S  IVRGDDVCWLHA+FRAK  GGPGGGVT
Subjt:  QRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNV----------SVGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

A0A5D3CAC6 Uncharacterized protein3.4e-4245.65Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFEL----------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E           
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFEL----------

Query:  --HRRNQEVRVTEKLESVLSDFGAFLG-KLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPL----------HRRISKRWLYWACPTQRRSVMLVEIK
          +R + +    +K+E  +      L  +L G +        PLSTLSVLRDNDAVVS G+             H  +    +             +EI+
Subjt:  --HRRNQEVRVTEKLESVLSDFGAFLG-KLVGNLVFISSGYIPLSTLSVLRDNDAVVSAGRAPL----------HRRISKRWLYWACPTQRRSVMLVEIK

Query:  LPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        L VPDTLPTSAESS S+S+TW+E   E  Y  + +   S     V S GIVR +DVCWLHAVFRAK+ GG GGGVT
Subjt:  LPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGGCAAATTGGTTGGGAATCTC
GTTTTCATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGATTAGTAAACG
TTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCAAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCT
CCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGGCTT
CACGCCGTCTTTCGGGCTAAGCTAACAGGTGGTCCGGGAGGGGGTGTGACATACTCAGAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGGCAAATTGGTTGGGAATCTC
GTTTTCATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGATTAGTAAACG
TTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCAAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCT
CCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGGCTT
CACGCCGTCTTTCGGGCTAAGCTAACAGGTGGTCCGGGAGGGGGTGTGACATACTCAGAGTCTTAG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVRVTEKLESVLSDFGAFLGKLVGNL
VFISSGYIPLSTLSVLRDNDAVVSAGRAPLHRRISKRWLYWACPTQRRSVMLVEIKLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVSVGSTGIVRGDDVCWL
HAVFRAKLTGGPGGGVTYSES