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Spg026915 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026915
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold13:24346484..24353259
RNA-Seq ExpressionSpg026915
SyntenySpg026915
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]4.9e-0962.96Show/hide
Query:  ASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFR
        AS++   + DCPLIC GESGQ  DSI L F  QDR+ SWEHN+TR N LLP FR
Subjt:  ASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]4.0e-1170.59Show/hide
Query:  DCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFREVDECS
        DCPLI   ESGQ ADS+ L FW QDRV SWEHNHTR NSLLP FRE+ + S
Subjt:  DCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFREVDECS
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0558Show/hide
Query:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
        I+++GLR      +  I DCPLIC GESGQ ADSI L FW QDRV  W+H
Subjt:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-1164.29Show/hide
Query:  SASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFRE
        S  L +  I DCPL C GESGQ  DSI L FW QDRV SWEHNHTR NS +P FR+
Subjt:  SASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFRE
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0558Show/hide
Query:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
        I+++GLR      +  I DCPLIC GESGQ ADSI L FW QDRV  W+H
Subjt:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein2.4e-0962.96Show/hide
Query:  ASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFR
        AS++   + DCPLIC GESGQ  DSI L F  QDR+ SWEHN+TR N LLP FR
Subjt:  ASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFR
A0A5A7U202 Reverse transcriptase1.6e-0558Show/hide
Query:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
        I+++GLR      +  I DCPLIC GESGQ ADSI L FW QDRV  W+H
Subjt:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
A0A5A7U2P4 Integrase catalytic domain-containing protein1.9e-1170.59Show/hide
Query:  DCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFREVDECS
        DCPLI   ESGQ ADS+ L FW QDRV SWEHNHTR NSLLP FRE+ + S
Subjt:  DCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFREVDECS
A0A5D3C3J6 Gag/pol protein2.5e-1164.29Show/hide
Query:  SASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFRE
        S  L +  I DCPL C GESGQ  DSI L FW QDRV SWEHNHTR NS +P FR+
Subjt:  SASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEHNHTRRNSLLPDFRE
A0A5D3CBX3 Reverse transcriptase1.6e-0558Show/hide
Query:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
        I+++GLR      +  I DCPLIC GESGQ ADSI L FW QDRV  W+H
Subjt:  IQAMGLRVSASLSNFSIGDCPLICMGESGQYADSISLPFWRQDRVRSWEH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTGGTCTTATGCAAACTCATTTCATAGGATACCCCGCTCGCATGACTACTACATGGATGCTTTGGATCAATACGTCTGTGTTCGGGATGTGAAAATATGCCAAAG
AACCGGAAAGTTCAAGCAACAAGGAGCCAAGAGAGGGCATTCTGCCCATCAGCGTCGAGACGCCACTCTTGGAGGGTCTCGACGCTGCAAACCGTCTCCTTCTTCTTCGA
TTCGACCGGCCCCCTTCACCTCCCTTCGTGACTCCTCCAGCGAGCTCAGGACCAAGACAGCGGACGGCGAGCTCGGGACCACGATGGCGGACAGCACCTGGGCAGACCGT
TCCAGCGAGTTTGCGCGCGATTTAAAGGTTGATTTTGCATCTCTCTTGCCCGATCTCCCACTTAATCGATCGCTCCCTCACTCCCAGTCTCTCTTATCCCTGTTTTCGAG
CTTGTTGCAGTGTGGTGGTGGTCGGATAACAATGTTATCCGGCGACGTTTCCATTAGGCGCGAACTGCAGCGTGTGGGTCTGATTTTTGGGCGTTTTCCAGCGTGTTGTC
CAGTGGCGATTCAAGCAATGGGTCTTCGAGTTTCAGCGTCTTTGAGCAATTTCAGTATTGGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCAATACGCCGACTCA
ATAAGCCTACCATTTTGGAGACAAGATCGAGTGAGGAGCTGGGAACATAATCATACAAGAAGGAATTCACTCCTTCCCGACTTTAGGGAAGTAGATGAGTGTTCCCATAA
GTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTGGTCTTATGCAAACTCATTTCATAGGATACCCCGCTCGCATGACTACTACATGGATGCTTTGGATCAATACGTCTGTGTTCGGGATGTGAAAATATGCCAAAG
AACCGGAAAGTTCAAGCAACAAGGAGCCAAGAGAGGGCATTCTGCCCATCAGCGTCGAGACGCCACTCTTGGAGGGTCTCGACGCTGCAAACCGTCTCCTTCTTCTTCGA
TTCGACCGGCCCCCTTCACCTCCCTTCGTGACTCCTCCAGCGAGCTCAGGACCAAGACAGCGGACGGCGAGCTCGGGACCACGATGGCGGACAGCACCTGGGCAGACCGT
TCCAGCGAGTTTGCGCGCGATTTAAAGGTTGATTTTGCATCTCTCTTGCCCGATCTCCCACTTAATCGATCGCTCCCTCACTCCCAGTCTCTCTTATCCCTGTTTTCGAG
CTTGTTGCAGTGTGGTGGTGGTCGGATAACAATGTTATCCGGCGACGTTTCCATTAGGCGCGAACTGCAGCGTGTGGGTCTGATTTTTGGGCGTTTTCCAGCGTGTTGTC
CAGTGGCGATTCAAGCAATGGGTCTTCGAGTTTCAGCGTCTTTGAGCAATTTCAGTATTGGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCAATACGCCGACTCA
ATAAGCCTACCATTTTGGAGACAAGATCGAGTGAGGAGCTGGGAACATAATCATACAAGAAGGAATTCACTCCTTCCCGACTTTAGGGAAGTAGATGAGTGTTCCCATAA
GTGGTGA
Protein sequenceShow/hide protein sequence
MVWSYANSFHRIPRSHDYYMDALDQYVCVRDVKICQRTGKFKQQGAKRGHSAHQRRDATLGGSRRCKPSPSSSIRPAPFTSLRDSSSELRTKTADGELGTTMADSTWADR
SSEFARDLKVDFASLLPDLPLNRSLPHSQSLLSLFSSLLQCGGGRITMLSGDVSIRRELQRVGLIFGRFPACCPVAIQAMGLRVSASLSNFSIGDCPLICMGESGQYADS
ISLPFWRQDRVRSWEHNHTRRNSLLPDFREVDECSHKW