; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026932 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026932
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold13:27160600..27164255
RNA-Seq ExpressionSpg026932
SyntenySpg026932
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-3160.27Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKIDNLEVKLFDEVSSD
        +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMAT +EENQC  ST+ + SAF+RLS+STSKK R STS FDRLK+TNDQ QR++ +L+ K F E + D
Subjt:  KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEGSHAL
         K+ S VPSRMKRK SV INTE  SL V+    +F     EG   +
Subjt:  KKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEGSHAL

KAA0051515.1 hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa]6.2e-3161.31Show/hide
Query:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK
        H+ S +E N H   S+EVDNS + +QR SVFDRIKP TTR SVFQR+SMAT +EENQC   T+T+ S F+RLS+ST KK+R STS FDRLK+TNDQ QR+
Subjt:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK

Query:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE
        + +L+ K F E + D K+ S VPSRMKRK SV INT+
Subjt:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE

KAA0062746.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-3151.61Show/hide
Query:  MQEHINTLMKAIEEKDSQIAHLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKS
        +++H+  +++        + H  S +E N +   SKEVDNS + ++RTS+FDRIKPSTTR SVF+R+SMAT +EENQC  ST TQ SAF+RLS+STSKK 
Subjt:  MQEHINTLMKAIEEKDSQIAHLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKS

Query:  RSSTSVFDRLKVTNDQPQRKIDNLEVKLF-DEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILS-KFEGSHALHQS
        R S S FDRLK+TN+Q QR+I  L+ K F +E + D K+ + VPSRMKRK SV I+TE  SL V+  L +F  S   EG H L ++
Subjt:  RSSTSVFDRLKVTNDQPQRKIDNLEVKLF-DEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILS-KFEGSHALHQS

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-3061.31Show/hide
Query:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK
        H  S +E + +   SKEV+NS +  QRTSVFDRIKPSTTR SVFQR+SMAT +EENQC    +T+ S F+RLS+STSKK R STS FDRLK+ NDQ QR+
Subjt:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK

Query:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE
        + +L+ K F E + D K+ S VPSRMKRK SV INTE
Subjt:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE

TYK20938.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-3154.78Show/hide
Query:  HLRSQIENQHIAES-KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK
        H  S +E  +  +S +EVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT +EENQC  ST+ + SA +RLS+STSKK R ST  FDRLK+TNDQ QR+
Subjt:  HLRSQIENQHIAES-KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK

Query:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEG
        + +L+ K F E + D K+   +PSR+KRKFSV INTE   + +++  R F   KF+G
Subjt:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEG

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein2.3e-3160.27Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKIDNLEVKLFDEVSSD
        +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMAT +EENQC  ST+ + SAF+RLS+STSKK R STS FDRLK+TNDQ QR++ +L+ K F E + D
Subjt:  KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEGSHAL
         K+ S VPSRMKRK SV INTE  SL V+    +F     EG   +
Subjt:  KKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEGSHAL

A0A5A7V7A0 Retrotransposon gag protein8.8e-3161.31Show/hide
Query:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK
        H  S +E + +   SKEV+NS +  QRTSVFDRIKPSTTR SVFQR+SM T +EENQC    +T+ S F+RLS+STSKK R STSVFDRLK+T+DQ QR+
Subjt:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK

Query:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE
        + +L+ K F E + D K+ S VPSRMKRK SV INTE
Subjt:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE

A0A5A7V8H3 Retrotransposon gag protein1.8e-3151.61Show/hide
Query:  MQEHINTLMKAIEEKDSQIAHLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKS
        +++H+  +++        + H  S +E N +   SKEVDNS + ++RTS+FDRIKPSTTR SVF+R+SMAT +EENQC  ST TQ SAF+RLS+STSKK 
Subjt:  MQEHINTLMKAIEEKDSQIAHLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKS

Query:  RSSTSVFDRLKVTNDQPQRKIDNLEVKLF-DEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILS-KFEGSHALHQS
        R S S FDRLK+TN+Q QR+I  L+ K F +E + D K+ + VPSRMKRK SV I+TE  SL V+  L +F  S   EG H L ++
Subjt:  RSSTSVFDRLKVTNDQPQRKIDNLEVKLF-DEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILS-KFEGSHALHQS

A0A5D3DBR8 Retrotransposon gag protein3.9e-3154.78Show/hide
Query:  HLRSQIENQHIAES-KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK
        H  S +E  +  +S +EVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT +EENQC  ST+ + SA +RLS+STSKK R ST  FDRLK+TNDQ QR+
Subjt:  HLRSQIENQHIAES-KEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK

Query:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEG
        + +L+ K F E + D K+   +PSR+KRKFSV INTE   + +++  R F   KF+G
Subjt:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEVHSLQVRRFLRVFILSKFEG

A0A5D3DKF5 Uncharacterized protein3.0e-3161.31Show/hide
Query:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK
        H+ S +E N H   S+EVDNS + +QR SVFDRIKP TTR SVFQR+SMAT +EENQC   T+T+ S F+RLS+ST KK+R STS FDRLK+TNDQ QR+
Subjt:  HLRSQIE-NQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRK

Query:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE
        + +L+ K F E + D K+ S VPSRMKRK SV INT+
Subjt:  IDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTACCCACTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGTTTCTATCATTGCAGGCAAAGAAACAACATTGCAGGGGGCATATACCAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGGCGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCAATTGAAGAAAAAGATTCTCAAATCGCGCACCTAAGGAGCCAAATTGAGAACCAACATATCGCTGAATCAAAAGAAGTTGACAATTCCAAG
AAGGGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACATCAAAAGAAGAAAATCAATGTTC
GGCGTCCACCTTCACTCAACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAAAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATC
AACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGTAGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTCTGTT
CTCATAAATACAGAAGTTCATTCTCTCCAAGTTCGAAGGTTCTTACGCGTTTTCATTCTCTCCAAGTTTGAAGGTTCTCACGCGCTTCACCAAAGTTCATTCTCTCCAAG
TTCGAAGGTTCTTACGGCGGTTCTCAAGGTTCTCATGTTGCTATGCTGCAGGGACCCTTCTCTCTCCAAGTCGCGCGTCCCTTCTCTCTCCCTCCAAGTTCGAAGGGCAG
CTGCCAGTCCCTTCTCTCTCCAAGTTCGAAGTCCGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTACAAATGAAG
TTGTTGACGATCGTTGTAGACGAGTCTGGTGACCACGCCTGCAGGAAACTACAGTCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTACCCACTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGTTTCTATCATTGCAGGCAAAGAAACAACATTGCAGGGGGCATATACCAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGGCGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCAATTGAAGAAAAAGATTCTCAAATCGCGCACCTAAGGAGCCAAATTGAGAACCAACATATCGCTGAATCAAAAGAAGTTGACAATTCCAAG
AAGGGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACATCAAAAGAAGAAAATCAATGTTC
GGCGTCCACCTTCACTCAACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAAAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATC
AACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGTAGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTCTGTT
CTCATAAATACAGAAGTTCATTCTCTCCAAGTTCGAAGGTTCTTACGCGTTTTCATTCTCTCCAAGTTTGAAGGTTCTCACGCGCTTCACCAAAGTTCATTCTCTCCAAG
TTCGAAGGTTCTTACGGCGGTTCTCAAGGTTCTCATGTTGCTATGCTGCAGGGACCCTTCTCTCTCCAAGTCGCGCGTCCCTTCTCTCTCCCTCCAAGTTCGAAGGGCAG
CTGCCAGTCCCTTCTCTCTCCAAGTTCGAAGTCCGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTACAAATGAAG
TTGTTGACGATCGTTGTAGACGAGTCTGGTGACCACGCCTGCAGGAAACTACAGTCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MGSTTHCCFNELTLQEDKVSIIAGKETTLQGAYTNDKFLVKYNPLFELDSGVVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIAHLRSQIENQHIAESKEVDNSK
KGEQRTSVFDRIKPSTTRPSVFQRMSMATSKEENQCSASTFTQPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPQRKIDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSV
LINTEVHSLQVRRFLRVFILSKFEGSHALHQSSFSPSSKVLTAVLKVLMLLCCRDPSLSKSRVPSLSLQVRRAAASPFSLQVRSPVTTPAGNYSHQSDWSRQVVKSLQMK
LLTIVVDESGDHACRKLQSSK