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Spg026945 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026945
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:26492389..26499739
RNA-Seq ExpressionSpg026945
SyntenySpg026945
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6271249.1 unnamed protein product [Miscanthus lutarioriparius]7.1e-1326.62Show/hide
Query:  RSGNQARRRGDRDG---DDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFV--W
        R  N+ R     DG   +D + I+     +++N+F  +S     I  +L  I  KV Q +N  L  P+T  EI++A+  M PTKAPGPDG   L +   W
Subjt:  RSGNQARRRGDRDG---DDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFV--W

Query:  D-----PWGGVKGIPFILLLSENSPK--GSHKSPASRSLRVIPVLNKINYESVSITLPLYGIMEFQSFSKFLDFSLPPPMAELLAIKEGVDFAISLGGEM
        D         V+ +    +  +   +     K   S  +    V+   N   ++ T            ++ +     P MAE LA++  + F      + 
Subjt:  D-----PWGGVKGIPFILLLSENSPK--GSHKSPASRSLRVIPVLNKINYESVSITLPLYGIMEFQSFSKFLDFSLPPPMAELLAIKEGVDFAISLGGEM

Query:  LIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAKRAKR
        +++ +DC+     + +K +  S +G+IV  I+M   + +DI F FV R CN +A  +AK A +
Subjt:  LIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAKRAKR

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]2.7e-1254.79Show/hide
Query:  DDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDG
        DDP+ IE  F  +F  +F S++P Q +ISE LK + PKVSQ MN  L  PFT  +I RA+ +M PTKAPGPDG
Subjt:  DDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDG

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]4.6e-0433.33Show/hide
Query:  MAELLAIKEGVDFAISLGGEMLIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAKRAKREICSEV
        +AE  AI  G+  A  +    LIVE+DC +   L++  + S +E+  I+  ++ +S   + + FSF+PR CN  A ++AK A R   ++V
Subjt:  MAELLAIKEGVDFAISLGGEMLIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAKRAKREICSEV

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]8.7e-1149.37Show/hide
Query:  IEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPW
        IE+ F  YF  +F S  P Q  + + +K ++PKV++ MN  L S FT+AE+ERAIK M P KAPGPDG  V  F  D W
Subjt:  IEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPW

XP_042958006.1 uncharacterized protein LOC122293492 [Carya illinoinensis]5.6e-1032.61Show/hide
Query:  EILALISTRDLLWELKARPR--------------SGNQARRR---GDRDGDDPDV------IEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMN
        E+ AL+   DL W+ +A+                  NQ R+R    + + D+ ++      +E+ F  YF N+F+S  P + +I   L  +  +V++GMN
Subjt:  EILALISTRDLLWELKARPR--------------SGNQARRR---GDRDGDDPDV------IEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMN

Query:  ARLLSPFTKAEIERAIKDMFPTKAPGPDG-GTVLRFVW
         RL   FT  E+E+A+K M P KAPGPDG G    + W
Subjt:  ARLLSPFTKAEIERAIKDMFPTKAPGPDG-GTVLRFVW

XP_042974747.1 uncharacterized protein LOC122306384 [Carya illinoinensis]4.2e-1339.62Show/hide
Query:  EILALISTRDLLWELKARPRSGNQARRRGDRDGDDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTK
        E+  L+   DL W  + R    NQ          + + IE  F AYF  +F+S +P Q ++++ LK ++P+V++GMN  L   FT+ EIE AIK M P K
Subjt:  EILALISTRDLLWELKARPRSGNQARRRGDRDGDDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTK

Query:  APGPDG
        +PGPDG
Subjt:  APGPDG

TrEMBL top hitse value%identityAlignment
A0A2I4GMS3 uncharacterized protein LOC1090092391.4e-0933.33Show/hide
Query:  EILALISTRDLLWELKARPR--------------SGNQARRRGD----RDGD-----DPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMN
        E+  L+   D+ W+ +A+                  NQ RR+       DG      D + IE  F  YF ++F S  P   ++ + LK ++P+ ++  N
Subjt:  EILALISTRDLLWELKARPR--------------SGNQARRRGD----RDGD-----DPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMN

Query:  ARLLSPFTKAEIERAIKDMFPTKAPGPDG
         +LL PF+K EIE AIK M P K+PGPDG
Subjt:  ARLLSPFTKAEIERAIKDMFPTKAPGPDG

A0A2N9FN47 Uncharacterized protein1.8e-0947.44Show/hide
Query:  DPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRF
        DPD IE     YF+N+F S++P    I+EV + +  +V+  MN+ LLSPF+  EI+ A+  M P+KAPGPDG T L F
Subjt:  DPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRF

A0A2N9FUZ0 Uncharacterized protein5.1e-0930.54Show/hide
Query:  GDDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPWGGVKGIPFILLLSEN
        G +P VI+DT  AYF+N+F S++PD   I EV++ ++  V+  MN  LL PF+  EI  A+  M P+KAPGPD            G +     +L+    
Subjt:  GDDPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPWGGVKGIPFILLLSEN

Query:  SPKG-SHKSPASRSLRVIPVLNKINYESVSITLPLYGIMEFQSFSKFLDFSLPPPMAELLAIKEGVD
        SP+  +   P S    +  +++K+    + + LP  G       S +L       ++ L+   EG D
Subjt:  SPKG-SHKSPASRSLRVIPVLNKINYESVSITLPLYGIMEFQSFSKFLDFSLPPPMAELLAIKEGVD

A0A2N9GWG4 Uncharacterized protein1.8e-0947.44Show/hide
Query:  DPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRF
        DPD IE     YF+N+F S++P    I+EV + +  +V+  MN+ LLSPF+  EI+ A+  M P+KAPGPDG T L F
Subjt:  DPDVIEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRF

A0A6P9ERU0 uncharacterized protein LOC1183498534.2e-1149.37Show/hide
Query:  IEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPW
        IE+ F  YF  +F S  P Q  + + +K ++PKV++ MN  L S FT+AE+ERAIK M P KAPGPDG  V  F  D W
Subjt:  IEDTFGAYFNNIFESASPDQGKISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0435.37Show/hide
Query:  PPMAELLAIKEGVDFAISLGGEMLIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAK
        P MAE +A+   + +A S+G   L + +D  Q    ++ +  S    G I D + + SL   D+ FSFVPR  N +AD +AK
Subjt:  PPMAELLAIKEGVDFAISLGGEMLIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGATCAGGAATCGCGGAAGAGGAAGGAAGGCAATGCGATGGTTTTGGAGAGGAAAAAGCCTCGAGTTGTTGGAGTTCGTCTCAACGCTGTCGCCAGATTTTCTAT
AAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGA
ATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGATCCGGACGTGATTGAGGATACGTTTGGAGCCTATTTCAATAATATATTTGAGTCTGCAAGTCCAGATCAGGGC
AAGATTTCTGAAGTTTTGAAGTGCATTCAGCCTAAAGTCTCTCAAGGTATGAATGCGAGGCTTTTGTCTCCCTTTACCAAGGCTGAGATTGAAAGGGCTATCAAGGATAT
GTTCCCCACGAAGGCCCCTGGACCCGACGGAGGGACTGTCCTTAGATTTGTCTGGGACCCCTGGGGTGGGGTGAAAGGTATCCCATTCATTCTCCTACTCTCAGAGAATT
CTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTATTAAACAAAATTAATTACGAATCGGTCTCAATCACGCTTCCGCTTTATGGAATT
ATGGAATTCCAATCCTTCAGTAAGTTCTTGGATTTCTCTCTTCCTCCTCCGATGGCCGAATTATTAGCCATTAAAGAAGGTGTGGATTTTGCTATTTCTTTGGGAGGCGA
GATGCTTATTGTGGAGACAGATTGTATTCAAGCTTATAATCTGGTGAGTCGAAAGGAGGTTTCGTGGAGTGAAGTCGGATCGATTGTTGATGGTATTCAAATGAAATCTT
TGTCAGGTGAAGATATCGTTTTTTCTTTTGTTCCGAGAGAGTGTAATGTAATTGCTGATTCCATAGCGAAGAGAGCTAAGCGAGAGATTTGTAGCGAAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGGATCAGGAATCGCGGAAGAGGAAGGAAGGCAATGCGATGGTTTTGGAGAGGAAAAAGCCTCGAGTTGTTGGAGTTCGTCTCAACGCTGTCGCCAGATTTTCTAT
AAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGA
ATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGATCCGGACGTGATTGAGGATACGTTTGGAGCCTATTTCAATAATATATTTGAGTCTGCAAGTCCAGATCAGGGC
AAGATTTCTGAAGTTTTGAAGTGCATTCAGCCTAAAGTCTCTCAAGGTATGAATGCGAGGCTTTTGTCTCCCTTTACCAAGGCTGAGATTGAAAGGGCTATCAAGGATAT
GTTCCCCACGAAGGCCCCTGGACCCGACGGAGGGACTGTCCTTAGATTTGTCTGGGACCCCTGGGGTGGGGTGAAAGGTATCCCATTCATTCTCCTACTCTCAGAGAATT
CTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTATTAAACAAAATTAATTACGAATCGGTCTCAATCACGCTTCCGCTTTATGGAATT
ATGGAATTCCAATCCTTCAGTAAGTTCTTGGATTTCTCTCTTCCTCCTCCGATGGCCGAATTATTAGCCATTAAAGAAGGTGTGGATTTTGCTATTTCTTTGGGAGGCGA
GATGCTTATTGTGGAGACAGATTGTATTCAAGCTTATAATCTGGTGAGTCGAAAGGAGGTTTCGTGGAGTGAAGTCGGATCGATTGTTGATGGTATTCAAATGAAATCTT
TGTCAGGTGAAGATATCGTTTTTTCTTTTGTTCCGAGAGAGTGTAATGTAATTGCTGATTCCATAGCGAAGAGAGCTAAGCGAGAGATTTGTAGCGAAGTGTAG
Protein sequenceShow/hide protein sequence
MLDQESRKRKEGNAMVLERKKPRVVGVRLNAVARFSINSSFHATAKGSPIGEILALISTRDLLWELKARPRSGNQARRRGDRDGDDPDVIEDTFGAYFNNIFESASPDQG
KISEVLKCIQPKVSQGMNARLLSPFTKAEIERAIKDMFPTKAPGPDGGTVLRFVWDPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVLNKINYESVSITLPLYGI
MEFQSFSKFLDFSLPPPMAELLAIKEGVDFAISLGGEMLIVETDCIQAYNLVSRKEVSWSEVGSIVDGIQMKSLSGEDIVFSFVPRECNVIADSIAKRAKREICSEV