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Spg026955 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026955
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpollen-specific protein C13-like
Genome locationscaffold7:29215865..29220210
RNA-Seq ExpressionSpg026955
SyntenySpg026955
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585283.1 hypothetical protein SDJN03_18016, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0471.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFV++ ALCVLP LVA +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
KAG7020202.1 Protein DOWNSTREAM OF FLC [Cucurbita argyrosperma subsp. argyrosperma]1.5e-0471.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFV++ ALCVLP LVA +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
XP_022951574.1 pollen-specific protein C13-like [Cucurbita moschata]1.5e-0471.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFV++ ALCVLP LVA +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
XP_023001897.1 pollen-specific protein C13-like [Cucurbita maxima]1.5e-0471.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFVV+ ALCVLP L+A +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
XP_023536678.1 protein DOWNSTREAM OF FLC-like [Cucurbita pepo subsp. pepo]1.5e-0471.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFV++ ALCVLP LVA +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
TrEMBL top hitse value%identityAlignment
A0A6J1BSS2 pollen-specific protein C13-like1.6e-0471.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARF ++ ALCVLP LVA SRPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
A0A6J1GJ67 pollen-specific protein C13-like7.3e-0571.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFV++ ALCVLP LVA +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
A0A6J1I8G6 60S ribosome subunit biogenesis protein NIP7 homolog8.1e-0475.76Show/hide
Query:  VGTCIDKFTHGGSFHLTVHSLGLLIAEAVMLGW
        +GTCI KFTHGGSFHLTVHSLGLL A A    W
Subjt:  VGTCIDKFTHGGSFHLTVHSLGLLIAEAVMLGW
A0A6J1IQ28 60S ribosome subunit biogenesis protein NIP7 homolog8.1e-0470.59Show/hide
Query:  LVGTCIDKFTHGGSFHLTVHSLGLLIAEAVMLGW
        ++GTCI KFTHGGSFHLTVHSLGLL + A    W
Subjt:  LVGTCIDKFTHGGSFHLTVHSLGLLIAEAVMLGW
A0A6J1KHX3 pollen-specific protein C13-like7.3e-0571.79Show/hide
Query:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
        MARFVV+ ALCVLP L+A +RPVRTP VV GKVY D  L
Subjt:  MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G15770.1 RNA binding2.1e-0459.38Show/hide
Query:  GTCIDKFTHGGSFHLTVHSLGLLIAEAVMLGW
        GTCI K+TH GSFHLT+ SL +L A A    W
Subjt:  GTCIDKFTHGGSFHLTVHSLGLLIAEAVMLGW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGATTTGTGGTTATCTCTGCTCTCTGTGTGCTTCCCACACTCGTCGCCACTAGTCGGCCCGTCCGAACTCCGCTCGTTGTTCATGGTAAAGTCTACTATGACAA
TTCCTTGCCGACTTCGAAACTTCGACCATTACCTACATTCACGATGTGGGTTTTAAGATGTGGGTCTTTGGTCGATTTTCTTCATCCATTTCTTCCTCTTGTCAACAGCG
TGGGTTACCGTAGGTGTGGGTTGCCATGGGTTTCTTCTTCTCACCGGTGGTGCGGCGTGGGTGGTCGTGGTTTGTTTGCCTTTTCCCTTGTCGGCACCTGCATCGACAAG
TTCACTCATGGCGGTAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGATAGCAGAAGCAGTGATGTTGGGATGGAGATTGGAGTGGTATCGATTCTCTGCAACGAC
TGAAGCCATACGAGCAAAGTTCGCTTTCACATTTTGGGATACAAGTGCAGTCAGTGCAATTCATTCAATACTAGGAGGATTTCTACTGGAGAACGTCAATGAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGATTTGTGGTTATCTCTGCTCTCTGTGTGCTTCCCACACTCGTCGCCACTAGTCGGCCCGTCCGAACTCCGCTCGTTGTTCATGGTAAAGTCTACTATGACAA
TTCCTTGCCGACTTCGAAACTTCGACCATTACCTACATTCACGATGTGGGTTTTAAGATGTGGGTCTTTGGTCGATTTTCTTCATCCATTTCTTCCTCTTGTCAACAGCG
TGGGTTACCGTAGGTGTGGGTTGCCATGGGTTTCTTCTTCTCACCGGTGGTGCGGCGTGGGTGGTCGTGGTTTGTTTGCCTTTTCCCTTGTCGGCACCTGCATCGACAAG
TTCACTCATGGCGGTAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGATAGCAGAAGCAGTGATGTTGGGATGGAGATTGGAGTGGTATCGATTCTCTGCAACGAC
TGAAGCCATACGAGCAAAGTTCGCTTTCACATTTTGGGATACAAGTGCAGTCAGTGCAATTCATTCAATACTAGGAGGATTTCTACTGGAGAACGTCAATGAAAACTGA
Protein sequenceShow/hide protein sequence
MARFVVISALCVLPTLVATSRPVRTPLVVHGKVYYDNSLPTSKLRPLPTFTMWVLRCGSLVDFLHPFLPLVNSVGYRRCGLPWVSSSHRWCGVGGRGLFAFSLVGTCIDK
FTHGGSFHLTVHSLGLLIAEAVMLGWRLEWYRFSATTEAIRAKFAFTFWDTSAVSAIHSILGGFLLENVNEN