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Spg026970 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026970
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:29448631..29450368
RNA-Seq ExpressionSpg026970
SyntenySpg026970
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0847.92Show/hide
Query:  EEFLVESEALFGMVGNRIQVSCRV-----------FENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        E   VESEA  G VG  IQ                 +  E D   I   S L  L   +  VEIELPVPDTLPTS ES  S+SSTWLELY ESVH+
Subjt:  EEFLVESEALFGMVGNRIQVSCRV-----------FENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]3.6e-1647.69Show/hide
Query:  FLVESEA-----LFGMVGNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIEL
        FLV S+A     L+ +      VSC VFENEEF VYFINFG VLRKLWVLEVR                                          VEIEL
Subjt:  FLVESEA-----LFGMVGNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIEL

Query:  PVPDTLPTSAESSRSSSSTWLELYIESVHI
        P P+ LPTSAESSRS+SSTWLELY E VH+
Subjt:  PVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]1.0e-1551.85Show/hide
Query:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWLE
        VSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ESS S+SSTWLE
Subjt:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWLE

Query:  LYIESVHI
        LYIESVH+
Subjt:  LYIESVHI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.3e-1053.93Show/hide
Query:  EEFLVESEALFGMVGNRIQVSCRVFENEEFDVYFINF----GSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        E   VESEALFGMV   IQ          +   F+N         R+   L+  VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  EEFLVESEALFGMVGNRIQVSCRVFENEEFDVYFINF----GSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]3.3e-0947.42Show/hide
Query:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSST
        VSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAESS S+SS+
Subjt:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSST

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein1.7e-1647.69Show/hide
Query:  FLVESEA-----LFGMVGNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIEL
        FLV S+A     L+ +      VSC VFENEEF VYFINFG VLRKLWVLEVR                                          VEIEL
Subjt:  FLVESEA-----LFGMVGNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIEL

Query:  PVPDTLPTSAESSRSSSSTWLELYIESVHI
        P P+ LPTSAESSRS+SSTWLELY E VH+
Subjt:  PVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7V5Z6 Uncharacterized protein5.1e-1651.85Show/hide
Query:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWLE
        VSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ESS S+SSTWLE
Subjt:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWLE

Query:  LYIESVHI
        LYIESVH+
Subjt:  LYIESVHI

A0A5D3BET3 Uncharacterized protein1.1e-1053.93Show/hide
Query:  EEFLVESEALFGMVGNRIQVSCRVFENEEFDVYFINF----GSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        E   VESEALFGMV   IQ          +   F+N         R+   L+  VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  EEFLVESEALFGMVGNRIQVSCRVFENEEFDVYFINF----GSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5D3BQ75 Uncharacterized protein1.6e-0947.42Show/hide
Query:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSST
        VSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAESS S+SS+
Subjt:  VSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSST

A0A5D3DIM8 Uncharacterized protein1.0e-0854.93Show/hide
Query:  GNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        GNR+  S +  E ++  ++ ++  SVLR     +V VEIELPVPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  GNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCGTATTCAAGTATCTTGTAGAGTGTTCGA
AAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAA
CGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
CACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCGTATTCAAGTATCTTGTAGAGTGTTCGA
AAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAA
CGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
HFKEGVKEEEEEEFLVESEALFGMVGNRIQVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVL