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Spg026972 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026972
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:29996874..30004797
RNA-Seq ExpressionSpg026972
SyntenySpg026972
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]3.6e-0645.16Show/hide
Query:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVT
        PRGNR SL+T +L KT                  EIELPV DTLP SA S  S+S SA        + EDDVCWLH +   K AG  GG + T
Subjt:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.7e-1134.78Show/hide
Query:  MAEYGFNLPISGILFGLSYTDRIKRRKIEGSREARICTCCVRGISGQIGWESRFHFFRPRGNRSSLKTRKLAKTEEIELPVPDTLPTSAGSFRSSSSSAF
        +AE G N     +LFGLSY + ++             T  +    G + +        PRGNR +L T KL KT EIELPVPDTLPTSA S +S+SS+  
Subjt:  MAEYGFNLPISGILFGLSYTDRIKRRKIEGSREARICTCCVRGISGQIGWESRFHFFRPRGNRSSLKTRKLAKTEEIELPVPDTLPTSAGSFRSSSSSAF

Query:  Q--------------------------QGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP
        +                          +G    +  DD+CWLHA+   K AGS GG ++ P
Subjt:  Q--------------------------QGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.6e-0943.52Show/hide
Query:  RFHFFRPRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP
        + +  RPRGNR SL+T KL KT                  EIELPVPDTLPTSA SF S+S S         +  DDVCWLHA+   K AG  GG +   
Subjt:  RFHFFRPRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP

Query:  EAGGDVRE
         A G  ++
Subjt:  EAGGDVRE

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.6e-0638.26Show/hide
Query:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQ--------------------------QGQQVSLEEDDVCW
        PRGNRSSL+T +L KT                  EIELPVPDTLPTSA SF S+SS+  +                          +G    +  DDVCW
Subjt:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQ--------------------------QGQQVSLEEDDVCW

Query:  LHAISLTKLAGSLGG
        LH +   K+AG  GG
Subjt:  LHAISLTKLAGSLGG

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]3.6e-0641.24Show/hide
Query:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPT---SAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP
        PRGNR SL+T +L KT                  EIELPVPDTLPT        R++S   + +G    +  DDVCWLHA+   K+AG  GG ++ P
Subjt:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPT---SAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.8e-1134.78Show/hide
Query:  MAEYGFNLPISGILFGLSYTDRIKRRKIEGSREARICTCCVRGISGQIGWESRFHFFRPRGNRSSLKTRKLAKTEEIELPVPDTLPTSAGSFRSSSSSAF
        +AE G N     +LFGLSY + ++             T  +    G + +        PRGNR +L T KL KT EIELPVPDTLPTSA S +S+SS+  
Subjt:  MAEYGFNLPISGILFGLSYTDRIKRRKIEGSREARICTCCVRGISGQIGWESRFHFFRPRGNRSSLKTRKLAKTEEIELPVPDTLPTSAGSFRSSSSSAF

Query:  Q--------------------------QGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP
        +                          +G    +  DD+CWLHA+   K AGS GG ++ P
Subjt:  Q--------------------------QGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP

A0A5A7VIY9 Uncharacterized protein7.8e-0738.26Show/hide
Query:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQ--------------------------QGQQVSLEEDDVCW
        PRGNRSSL+T +L KT                  EIELPVPDTLPTSA SF S+SS+  +                          +G    +  DDVCW
Subjt:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQ--------------------------QGQQVSLEEDDVCW

Query:  LHAISLTKLAGSLGG
        LH +   K+AG  GG
Subjt:  LHAISLTKLAGSLGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein7.5e-1043.52Show/hide
Query:  RFHFFRPRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP
        + +  RPRGNR SL+T KL KT                  EIELPVPDTLPTSA SF S+S S         +  DDVCWLHA+   K AG  GG +   
Subjt:  RFHFFRPRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP

Query:  EAGGDVRE
         A G  ++
Subjt:  EAGGDVRE

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.7e-0645.16Show/hide
Query:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVT
        PRGNR SL+T +L KT                  EIELPV DTLP SA S  S+S SA        + EDDVCWLH +   K AG  GG + T
Subjt:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.7e-0641.24Show/hide
Query:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPT---SAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP
        PRGNR SL+T +L KT                  EIELPVPDTLPT        R++S   + +G    +  DDVCWLHA+   K+AG  GG ++ P
Subjt:  PRGNRSSLKTRKLAKT-----------------EEIELPVPDTLPT---SAGSFRSSSSSAFQQGQQVSLEEDDVCWLHAISLTKLAGSLGGVIVTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATATGGGTTCAACCTGCCTATCTCTGGTATTTTATTCGGTTTGAGCTACACAGATAGAATTAAGAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTG
TACTTGTTGTGTTCGGGGGATTTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTTAGGCCAAGAGGAAATAGGTCGAGTCTAAAGACCAGGAAACTAGCTAAGA
CAGAAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTTCAGATCAAGCTCCAGTTCAGCGTTTCAGCAGGGTCAACAGGTATCGTTGGAAGAG
GACGATGTCTGTTGGCTTCACGCCATCTCCCTCACTAAGCTAGCTGGTAGTTTGGGTGGGGTGATTGTAACGCCCGAGGCCGGAGGGGATGTAAGGGAATGTCGGTGTCG
TAAGGTGCCGAATCCGGATTCTGAATCCTGTGCCTGGGGCGTTACTGATGGTATCAGAGTGGAACCCCTCCCAATTCCCCATCGTCGATTGCACTGTTGCCGTCACGAGC
TCCGTTCAAATCATCCCCGTCGTGTCCTTTCGTCGACGCCGTCGGTTGTAGGTGCAGCAACCGGCGTTCTGTTTTTCGACAAGTCAATGCATTGTGGGTCCTTGTTCCGA
CGAGTGTTCTTCAATGTTTCTGGTTATAGCAGCGACAAACAGCAACTGTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATATGGGTTCAACCTGCCTATCTCTGGTATTTTATTCGGTTTGAGCTACACAGATAGAATTAAGAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTG
TACTTGTTGTGTTCGGGGGATTTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTTAGGCCAAGAGGAAATAGGTCGAGTCTAAAGACCAGGAAACTAGCTAAGA
CAGAAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTTCAGATCAAGCTCCAGTTCAGCGTTTCAGCAGGGTCAACAGGTATCGTTGGAAGAG
GACGATGTCTGTTGGCTTCACGCCATCTCCCTCACTAAGCTAGCTGGTAGTTTGGGTGGGGTGATTGTAACGCCCGAGGCCGGAGGGGATGTAAGGGAATGTCGGTGTCG
TAAGGTGCCGAATCCGGATTCTGAATCCTGTGCCTGGGGCGTTACTGATGGTATCAGAGTGGAACCCCTCCCAATTCCCCATCGTCGATTGCACTGTTGCCGTCACGAGC
TCCGTTCAAATCATCCCCGTCGTGTCCTTTCGTCGACGCCGTCGGTTGTAGGTGCAGCAACCGGCGTTCTGTTTTTCGACAAGTCAATGCATTGTGGGTCCTTGTTCCGA
CGAGTGTTCTTCAATGTTTCTGGTTATAGCAGCGACAAACAGCAACTGTGCTAA
Protein sequenceShow/hide protein sequence
MAEYGFNLPISGILFGLSYTDRIKRRKIEGSREARICTCCVRGISGQIGWESRFHFFRPRGNRSSLKTRKLAKTEEIELPVPDTLPTSAGSFRSSSSSAFQQGQQVSLEE
DDVCWLHAISLTKLAGSLGGVIVTPEAGGDVRECRCRKVPNPDSESCAWGVTDGIRVEPLPIPHRRLHCCRHELRSNHPRRVLSSTPSVVGAATGVLFFDKSMHCGSLFR
RVFFNVSGYSSDKQQLC