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Spg026974 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026974
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:29370386..29377334
RNA-Seq ExpressionSpg026974
SyntenySpg026974
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]4.9e-3055.17Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESVH+             ++++FNV VGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GGVTTWKKKKEIAEGLRLKKRGKAHASAT------MAESGFNLPI
          VTTW + + +    R  +R + + + T       +E G + PI
Subjt:  GGVTTWKKKKEIAEGLRLKKRGKAHASAT------MAESGFNLPI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-2673.03Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+             ++++F+VLVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-2755.15Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+       +    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT
        GGPGGGV    T K+++   +G++   +G++   ++
Subjt:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.3e-2673.03Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+             ++++F+VLVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-2755.15Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+       +    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT
        GGPGGGV    T K+++   +G++   +G++   ++
Subjt:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.4e-3055.17Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESVH+             ++++FNV VGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GGVTTWKKKKEIAEGLRLKKRGKAHASAT------MAESGFNLPI
          VTTW + + +    R  +R + + + T       +E G + PI
Subjt:  GGVTTWKKKKEIAEGLRLKKRGKAHASAT------MAESGFNLPI

A0A5A7V9N3 Reverse transcriptase2.1e-2673.03Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+             ++++F+VLVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

A0A5A7VMG9 Reverse transcriptase1.1e-2755.15Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+       +    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT
        GGPGGGV    T K+++   +G++   +G++   ++
Subjt:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT

A0A5D3DSY7 Putative Retrotransposon protein2.1e-2673.03Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+             ++++F+VLVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI-------------VNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

A0A5D3DX39 Reverse transcriptase1.1e-2755.15Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+       +    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT
        GGPGGGV    T K+++   +G++   +G++   ++
Subjt:  GGPGGGV---TTWKKKKEIAEGLRLKKRGKAHASAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGC
TTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGAAGAAGAAGAAGGAGATTGCTGAGGGTTTGAGGTTGAAGAAGAGAGGAAAA
GCTCATGCAAGTGCAACAATGGCAGAATCTGGATTCAACCTGCCTATCTTTGGTTTTGGATTCGGTTTGAGCTACACAGAAAGAACTAAGAAGCGAGCACAAGATTTTCG
TGCAAACCAGAAGGATCTCTGGTTTTCTCTTGTTTTTCGGTCATTGTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGGTTATATTCCGTTGTTGACGTTGAGTGTAC
TCCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCCGGTGTCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTTCAGTACGTTATTTTCTAAACCGAGT
TATGTCAGGGCTGCACCCCATTTAGACGTTGAGTCAGTTCAGATAGAACTAGCGGAGTACGGTCCAGGTATTGTTCAGAGTGAGTCCAATCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGC
TTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGAAGAAGAAGAAGGAGATTGCTGAGGGTTTGAGGTTGAAGAAGAGAGGAAAA
GCTCATGCAAGTGCAACAATGGCAGAATCTGGATTCAACCTGCCTATCTTTGGTTTTGGATTCGGTTTGAGCTACACAGAAAGAACTAAGAAGCGAGCACAAGATTTTCG
TGCAAACCAGAAGGATCTCTGGTTTTCTCTTGTTTTTCGGTCATTGTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGGTTATATTCCGTTGTTGACGTTGAGTGTAC
TCCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCCGGTGTCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTTCAGTACGTTATTTTCTAAACCGAGT
TATGTCAGGGCTGCACCCCATTTAGACGTTGAGTCAGTTCAGATAGAACTAGCGGAGTACGGTCCAGGTATTGTTCAGAGTGAGTCCAATCAGGACTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLFNVLVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWKKKKEIAEGLRLKKRGK
AHASATMAESGFNLPIFGFGFGLSYTERTKKRAQDFRANQKDLWFSLVFRSLWGVQVESEAPFGYIPLLTLSVLRDNNAVVEIELPVSDTLPTSAESSSSSFSTLFSKPS
YVRAAPHLDVESVQIELAEYGPGIVQSESNQD