; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027001 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027001
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:5746702..5753607
RNA-Seq ExpressionSpg027001
SyntenySpg027001
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1576.67Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE
        YI LLTLSVLRDN+ VVS  R    KD+GSAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]6.5e-3761.04Show/hide
Query:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI
        +WPRGNRS LQT EL KT              L TLSVLRDNDAVVSAG  HYDKD+G+A RAPLHRRTSKRWLYWACPT RR VML          VEI
Subjt:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI

Query:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA
        EL VPDTLPTSAESS+S+S S         +  DDV WLH +FR K  GG GG+
Subjt:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]6.5e-3761.04Show/hide
Query:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI
        +WPRGNRS LQT EL KT              L TLSVLRDNDAVVSAG  HYDKD+G+A RAPLHRRTSKRWLYWACPT RR VML          VEI
Subjt:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI

Query:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA
        EL VPDTLPTSAESS+S+S S         +  DDV WLH +FR K  GG GG+
Subjt:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]5.2e-1874.24Show/hide
Query:  YRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE
        YRVHTSYI LLTLSVLRDN+ ++S  R    KD+GSAGR PLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.1e-1842.37Show/hide
Query:  DLWPRGNRSGLQTRELAKTPEAIWYRVHTSYI------------PLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML
        D+ PRGNRS LQT +L K   +I Y      +            PL TLSVLRDNDAVVS G+ HYDKD+G  G    H       +         +   
Subjt:  DLWPRGNRSGLQTRELAKTPEAIWYRVHTSYI------------PLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML

Query:  VEIELPVPDTLPTSAESSKSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLAGGLGG
        +EIEL VPDTLPTSAESS S+SS             S  +   R+  E        E+DV WLHA+FR K+AGG GG
Subjt:  VEIELPVPDTLPTSAESSKSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLAGGLGG

TrEMBL top hitse value%identityAlignment
A0A5A7TCY8 DNA/RNA polymerases superfamily protein6.9e-1676.67Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE
        YI LLTLSVLRDN+ VVS  R    KD+GSAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE

A0A5A7VGQ5 Uncharacterized protein3.2e-3761.04Show/hide
Query:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI
        +WPRGNRS LQT EL KT              L TLSVLRDNDAVVSAG  HYDKD+G+A RAPLHRRTSKRWLYWACPT RR VML          VEI
Subjt:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI

Query:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA
        EL VPDTLPTSAESS+S+S S         +  DDV WLH +FR K  GG GG+
Subjt:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA

A0A5D3BG85 Uncharacterized protein3.2e-3761.04Show/hide
Query:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI
        +WPRGNRS LQT EL KT              L TLSVLRDNDAVVSAG  HYDKD+G+A RAPLHRRTSKRWLYWACPT RR VML          VEI
Subjt:  LWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML----------VEI

Query:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA
        EL VPDTLPTSAESS+S+S S         +  DDV WLH +FR K  GG GG+
Subjt:  ELPVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGA

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein2.5e-1874.24Show/hide
Query:  YRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE
        YRVHTSYI LLTLSVLRDN+ ++S  R    KD+GSAGR PLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVE

A0A5D3CAC6 Uncharacterized protein1.5e-1842.37Show/hide
Query:  DLWPRGNRSGLQTRELAKTPEAIWYRVHTSYI------------PLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML
        D+ PRGNRS LQT +L K   +I Y      +            PL TLSVLRDNDAVVS G+ HYDKD+G  G    H       +         +   
Subjt:  DLWPRGNRSGLQTRELAKTPEAIWYRVHTSYI------------PLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVML

Query:  VEIELPVPDTLPTSAESSKSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLAGGLGG
        +EIEL VPDTLPTSAESS S+SS             S  +   R+  E        E+DV WLHA+FR K+AGG GG
Subjt:  VEIELPVPDTLPTSAESSKSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLAGGLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTTGGAATGCAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTCC
CGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACTACGACAAAG
ACAATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAATCAAGCTCCAGTTCTACGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCT
TCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGCCGACCAGCACCCATGGCGGTTCCAGCTCACCGTCTCTCGCCCGTCGTCGATCCGCCCGCAGCCAT
ACCTGTGTACTCGTGCTTCTCTCCGCTCCTCTCTTCCTGAGTTTCTTTTTGGCGAGAAAACCCACCAGTCGGCGGCTCCTCCCCCTCGTTTGTGCGATGTCGACGCCCAG
CAACCCAAACCCGCAAGCACGACAACGTGCTCTTTCTCTCCTTGGCAACCCACGATCGATGAGACCCACGACTGTTCGGGATCTTCAACGGCGACAAGCAGTGGTTTTCG
AGGCACCTTGAGCAACTCTCCCTCGAGGACGTGGTTCTTGGGAGGCGTTAGGGCGGCTTTAGGGGCTTATAAGAAAGTTATAGGTTTGGACGATGAGCTGGACCTTGGCG
GTGAGGAGGAGAACTTCGAGGAAGATACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTTGGAATGCAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTCC
CGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACTACGACAAAG
ACAATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAATCAAGCTCCAGTTCTACGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCT
TCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGCCGACCAGCACCCATGGCGGTTCCAGCTCACCGTCTCTCGCCCGTCGTCGATCCGCCCGCAGCCAT
ACCTGTGTACTCGTGCTTCTCTCCGCTCCTCTCTTCCTGAGTTTCTTTTTGGCGAGAAAACCCACCAGTCGGCGGCTCCTCCCCCTCGTTTGTGCGATGTCGACGCCCAG
CAACCCAAACCCGCAAGCACGACAACGTGCTCTTTCTCTCCTTGGCAACCCACGATCGATGAGACCCACGACTGTTCGGGATCTTCAACGGCGACAAGCAGTGGTTTTCG
AGGCACCTTGAGCAACTCTCCCTCGAGGACGTGGTTCTTGGGAGGCGTTAGGGCGGCTTTAGGGGCTTATAAGAAAGTTATAGGTTTGGACGATGAGCTGGACCTTGGCG
GTGAGGAGGAGAACTTCGAGGAAGATACCTAG
Protein sequenceShow/hide protein sequence
MVVGMQNRAQDFRAKQEDLWPRGNRSGLQTRELAKTPEAIWYRVHTSYIPLLTLSVLRDNDAVVSAGRAHYDKDNGSAGRAPLHRRTSKRWLYWACPTQRRLVMLVEIEL
PVPDTLPTSAESSKSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGADQHPWRFQLTVSRPSSIRPQPYLCTRASLRSSLPEFLFGEKTHQSAAPPPRLCDVDAQ
QPKPASTTTCSFSPWQPTIDETHDCSGSSTATSSGFRGTLSNSPSRTWFLGGVRAALGAYKKVIGLDDELDLGGEEENFEEDT