; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027034 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027034
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:9159003..9162213
RNA-Seq ExpressionSpg027034
SyntenySpg027034
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.1e-3363.24Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EENQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ S +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.9e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  +EENQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ S +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EE+DNS + +QRTSVFDRIKP TTR SVFQR+SMA  KEENQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M  L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ S +PS MKRK SV INT+GSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ + +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ + +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein2.9e-3363.24Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EENQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ S +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5A7U9V3 Retrotransposon gag protein3.3e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EE+DNS + +QRTSVFDRIKP TTR SVFQR+SMA  KEENQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M  L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ S +PS MKRK SV INT+GSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5A7UI09 Retrotransposon gag protein1.9e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ + +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5D3BBF9 Gag protease polyprotein1.9e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  +EENQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ S +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5D3CCI8 Retrotransposon gag protein1.9e-3261.76Show/hide
Query:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE
        Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDE

Query:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF
           + K+ + +PSRMKRK SV INTEGSL  + P+F
Subjt:  VKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGTCTTACACGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGC
ATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCGGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAA
ACCCAAGAAAAAGAGAACTTTGCAACTTCCTACTACGTTGACGTAGAAGAGGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTC
AACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTG
TCTCCACATCGAAGAAAAGTCAACCTTCGACATCTTTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGATAACTTGGAGGTGAAACTTTTCGAT
GAAGTAAAAAGCGAAAAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTT
CGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCACACGCT
GCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAA
GGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTT
CTTCACCAAGTTCGAAGATTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCACACGCTGCGCTGC
TTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGTCTTACACGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGC
ATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCGGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAA
ACCCAAGAAAAAGAGAACTTTGCAACTTCCTACTACGTTGACGTAGAAGAGGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTC
AACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTG
TCTCCACATCGAAGAAAAGTCAACCTTCGACATCTTTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGATAACTTGGAGGTGAAACTTTTCGAT
GAAGTAAAAAGCGAAAAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTT
CGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCACACGCT
GCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAA
GGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTT
CTTCACCAAGTTCGAAGATTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCACACGCTGCGCTGC
TTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAA
Protein sequenceShow/hide protein sequence
MNKSYTSSTAHCCFNELTLQEDKTSIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESSQ
TQEKENFATSYYVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFD
EVKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKFEGPYTVRYCVVPSPSSKVLSCTTAALFLHQVRRFTRCAASFTKFEGSDVALLPSLSLKVPTLRCCAASFTKFE
GSHAALFRCSFSKFEDSHALRCSSFSSSSKVHTLRCFFTKFEDSHVALFLHQIRRLSRCAVSFSKFEGSHAALLPSPSSKVLTLHCFLL