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Spg027051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:6738301..6753302
RNA-Seq ExpressionSpg027051
SyntenySpg027051
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-1646.81Show/hide
Query:  TVNLWFFIRFEL-------HRMNQEVSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW-------------------
        TVNLW F+ F L              S +  E +   ++ ++  SVLR    +   VEIELPVPDTLPTSAESS S+SSTW                   
Subjt:  TVNLWFFIRFEL-------HRMNQEVSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW-------------------

Query:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.4e-1737.38Show/hide
Query:  IRKAHAKPAIAESGCKTVNLWFFIRFELHRMNQEVSCRVFENEAFDVYFINCGSVLRK-------LSVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNV
        I K +AKPAIAESGC    L            +  S R        + F +  S+L +          L+  VEIELPVPDTLPTSAESS+S+SSTW  +
Subjt:  IRKAHAKPAIAESGCKTVNLWFFIRFELHRMNQEVSCRVFENEAFDVYFINCGSVLRK-------LSVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNV

Query:  ---SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEE-EEEEFRG
           SV                     GS GIVRGDD+CWLHAVF AK AG PGG        +  RQ   G  Y  Q Q        R + E   E F  
Subjt:  ---SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEE-EEEEFRG

Query:  LRLKKIRKAHAKPA
           +  R   A+P+
Subjt:  LRLKKIRKAHAKPA

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]3.0e-1840.72Show/hide
Query:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR------------------------------------------VEIELPVPDTLPTSAE
        E+H+  Q+   VSCRV ENE F VYFINCG VLRKL VLEVR                                          VEIELPVPDTLPT   
Subjt:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR------------------------------------------VEIELPVPDTLPTSAE

Query:  SSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI
              +  +    GS GIVRGDDVCWLHAV RAK+AGGPGG        +  RQ   G    ++  R      ER +  + E+  G+ RLKK+
Subjt:  SSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.1e-1640Show/hide
Query:  ELHRMNQE---------VSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------
        E+H++NQ+         +S +  E +   ++ ++  SVLR  + +     IELPVPDTLPTSAESS S+SSTW                           
Subjt:  ELHRMNQE---------VSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------

Query:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI
        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG            Q+ +GS    +S        ERV   + ++  G+ RLKK+
Subjt:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]5.1e-1844.65Show/hide
Query:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR----------------------------------------------------------
        E+H+ NQ+   VSCRVFENE F VYFIN G VLRKL VLE R                                                          
Subjt:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR----------------------------------------------------------

Query:  -VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
         VEIELPVPDTLPTSAES        F  +  S GIVRGDDVCWLHAVFRAK AG PGG
Subjt:  -VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.0e-1646.81Show/hide
Query:  TVNLWFFIRFEL-------HRMNQEVSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW-------------------
        TVNLW F+ F L              S +  E +   ++ ++  SVLR    +   VEIELPVPDTLPTSAESS S+SSTW                   
Subjt:  TVNLWFFIRFEL-------HRMNQEVSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW-------------------

Query:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.4e+0044.29Show/hide
Query:  DFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERV------KEEEEEEFRGLRLKKIRKAHAKPAIAESG
        DFKRR GG+ LRQMSSGSAYQRQSQRA +     V      +E    E R        K+H    +  +G
Subjt:  DFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERV------KEEEEEEFRGLRLKKIRKAHAKPAIAESG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.0e-1640Show/hide
Query:  ELHRMNQE---------VSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------
        E+H++NQ+         +S +  E +   ++ ++  SVLR  + +     IELPVPDTLPTSAESS S+SSTW                           
Subjt:  ELHRMNQE---------VSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------

Query:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI
        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG            Q+ +GS    +S        ERV   + ++  G+ RLKK+
Subjt:  FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI

A0A5A7UAH6 CCHC-type domain-containing protein3.6e-1737.38Show/hide
Query:  IRKAHAKPAIAESGCKTVNLWFFIRFELHRMNQEVSCRVFENEAFDVYFINCGSVLRK-------LSVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNV
        I K +AKPAIAESGC    L            +  S R        + F +  S+L +          L+  VEIELPVPDTLPTSAESS+S+SSTW  +
Subjt:  IRKAHAKPAIAESGCKTVNLWFFIRFELHRMNQEVSCRVFENEAFDVYFINCGSVLRK-------LSVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNV

Query:  ---SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEE-EEEEFRG
           SV                     GS GIVRGDD+CWLHAVF AK AG PGG        +  RQ   G  Y  Q Q        R + E   E F  
Subjt:  ---SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEE-EEEEFRG

Query:  LRLKKIRKAHAKPA
           +  R   A+P+
Subjt:  LRLKKIRKAHAKPA

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.5e-1840.72Show/hide
Query:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR------------------------------------------VEIELPVPDTLPTSAE
        E+H+  Q+   VSCRV ENE F VYFINCG VLRKL VLEVR                                          VEIELPVPDTLPT   
Subjt:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR------------------------------------------VEIELPVPDTLPTSAE

Query:  SSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI
              +  +    GS GIVRGDDVCWLHAV RAK+AGGPGG        +  RQ   G    ++  R      ER +  + E+  G+ RLKK+
Subjt:  SSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMSSGSAYQRQSQRAPNHIKERVKEEEEEEFRGL-RLKKI

A0A5D3CSJ5 Putative polyprotein2.5e-1844.65Show/hide
Query:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR----------------------------------------------------------
        E+H+ NQ+   VSCRVFENE F VYFIN G VLRKL VLE R                                                          
Subjt:  ELHRMNQE---VSCRVFENEAFDVYFINCGSVLRKLSVLEVR----------------------------------------------------------

Query:  -VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
         VEIELPVPDTLPTSAES        F  +  S GIVRGDDVCWLHAVFRAK AG PGG
Subjt:  -VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAGAAGATCCACTTGACCCCAGCAGAATCGTGTGCTGCAACCAAATCTGCCGCTGAGCAAAATGGACAGCAGAATAATCAGGCTGAGAATCCTATCTTGGTAGC
GAACGATAGGGCCAGAGCCATTCGAGCGTATGCTTTTCCAATGTTTGATGAGTTAAATCCAGGAATTGTGCAGCACATTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAG
AATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTA
CACAGAATGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGCGTTTGATGTGTATTTCATTAATTGTGGTTCAGTATTGAGGAAGTTATCGGTGTTGGAAGTCAG
GGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTA
GAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACTTCAAGCGCCGATCTGGTGGCCAGTTGTTGAGGCAGATGAGT
TCGGGTAGTGCTTATCAGAGGCAGAGTCAGAGAGCCCCCAATCACATTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAG
AAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAG
TGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTCAGGGTAGAGATCGAGATCCCGGTGCCTGATACA
CTGCCGACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTCTTAGGCTCATCCAGGAGGGATGATGAAAATGGAGGGGCAAC
TGGGGCTTCTTCAGATGAGCTGGCCAGGAACATCCGCTTGATAGCCTCATCCCTCTCTCGAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAGAAGATCCACTTGACCCCAGCAGAATCGTGTGCTGCAACCAAATCTGCCGCTGAGCAAAATGGACAGCAGAATAATCAGGCTGAGAATCCTATCTTGGTAGC
GAACGATAGGGCCAGAGCCATTCGAGCGTATGCTTTTCCAATGTTTGATGAGTTAAATCCAGGAATTGTGCAGCACATTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAG
AATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTA
CACAGAATGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGCGTTTGATGTGTATTTCATTAATTGTGGTTCAGTATTGAGGAAGTTATCGGTGTTGGAAGTCAG
GGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTA
GAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACTTCAAGCGCCGATCTGGTGGCCAGTTGTTGAGGCAGATGAGT
TCGGGTAGTGCTTATCAGAGGCAGAGTCAGAGAGCCCCCAATCACATTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAG
AAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAG
TGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTCAGGGTAGAGATCGAGATCCCGGTGCCTGATACA
CTGCCGACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTCTTAGGCTCATCCAGGAGGGATGATGAAAATGGAGGGGCAAC
TGGGGCTTCTTCAGATGAGCTGGCCAGGAACATCCGCTTGATAGCCTCATCCCTCTCTCGAGCATAG
Protein sequenceShow/hide protein sequence
MFQKIHLTPAESCAATKSAAEQNGQQNNQAENPILVANDRARAIRAYAFPMFDELNPGIVQHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKTVNLWFFIRFEL
HRMNQEVSCRVFENEAFDVYFINCGSVLRKLSVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDFKRRSGGQLLRQMS
SGSAYQRQSQRAPNHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKTVNLWFFIRFELHRRNQEVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIEIPVPDT
LPTSAESSRSSSSTWLELYIESVLGSSRRDDENGGATGASSDELARNIRLIASSLSRA