; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027059 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027059
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold8:3009530..3016323
RNA-Seq ExpressionSpg027059
SyntenySpg027059
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054311.1 golgin subfamily A member 6-like protein 22 isoform X2 [Cucumis melo var. makuwa]8.2e-2452.59Show/hide
Query:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK
        SFS+GF   L+N+E T+V SL++L++  +F+  RRD R  +P+P  GF C SLF  LL PSP  E +F  V + KVPKK+RFF WQV+ GRV   DRL++
Subjt:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK

Query:  RMPSLVGPFCCILCWK
        +  SL+ PFCCILC K
Subjt:  RMPSLVGPFCCILCWK

TYK09969.1 calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]9.7e-2541.45Show/hide
Query:  VIKGSTPSFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVN
        V  G++ SFSFGF R LS+RET++VV+LISL+E   FR+GRRD   WSP P  GF C S F+ L+  +P SES+   +W++KVP+K   F WQV      
Subjt:  VIKGSTPSFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVN

Query:  TYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNIT
                                EEDLDH+LW C      WD F Q   ++
Subjt:  TYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNIT

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-2546.67Show/hide
Query:  LSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPF
        LS+  TT    L  ++  F    G R+   WS +P  GFS  SLF  LL PSP  E +F  VW++KV KK+RFF WQV+  R N  DRL++R        
Subjt:  LSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPF

Query:  CCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNI
        CCILC KA+EDLDH+LW C +ARA W  F Q  ++
Subjt:  CCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNI

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]9.7e-2551.28Show/hide
Query:  RPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVG
        R  S +E T V SL+S ++   FR GRRD   W+P+P  GF   S+F  LL P+P  E +F  VW   VPKK+ FF+WQV+  +VN  DRL++R  SLVG
Subjt:  RPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVG

Query:  PFCCILCWKAEEDLDHI
         FCC+LC KAE DLDH+
Subjt:  PFCCILCWKAEEDLDHI

XP_022968893.1 epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucurbita maxima]5.5e-2043.15Show/hide
Query:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK
        S  FGF  PLS+RE  DV SL+S +       G R+   WSP+P  G  C S F  L+L SP++        KV + KKI FF WQ +HGRVNT   + K
Subjt:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK

Query:  RMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWD----QFGQHL
            L+GP  C    KA E+LDHI+    FA  +WD     FG HL
Subjt:  RMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWD----QFGQHL

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025434.7e-2551.28Show/hide
Query:  RPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVG
        R  S +E T V SL+S ++   FR GRRD   W+P+P  GF   S+F  LL P+P  E +F  VW   VPKK+ FF+WQV+  +VN  DRL++R  SLVG
Subjt:  RPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVG

Query:  PFCCILCWKAEEDLDHI
         FCC+LC KAE DLDH+
Subjt:  PFCCILCWKAEEDLDHI

A0A5A7UL95 Golgin subfamily A member 6-like protein 22 isoform X24.0e-2452.59Show/hide
Query:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK
        SFS+GF   L+N+E T+V SL++L++  +F+  RRD R  +P+P  GF C SLF  LL PSP  E +F  V + KVPKK+RFF WQV+ GRV   DRL++
Subjt:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK

Query:  RMPSLVGPFCCILCWK
        +  SL+ PFCCILC K
Subjt:  RMPSLVGPFCCILCWK

A0A5D3CI74 Calpain-type cysteine protease DEK14.7e-2541.45Show/hide
Query:  VIKGSTPSFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVN
        V  G++ SFSFGF R LS+RET++VV+LISL+E   FR+GRRD   WSP P  GF C S F+ L+  +P SES+   +W++KVP+K   F WQV      
Subjt:  VIKGSTPSFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVN

Query:  TYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNIT
                                EEDLDH+LW C      WD F Q   ++
Subjt:  TYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNIT

A0A5D3E255 Reverse transcriptase1.2e-2546.67Show/hide
Query:  LSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPF
        LS+  TT    L  ++  F    G R+   WS +P  GFS  SLF  LL PSP  E +F  VW++KV KK+RFF WQV+  R N  DRL++R        
Subjt:  LSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPF

Query:  CCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNI
        CCILC KA+EDLDH+LW C +ARA W  F Q  ++
Subjt:  CCILCWKAEEDLDHILWSCAFARAAWDQFGQHLNI

A0A6J1HZE6 epimerase family protein SDR39U1 homolog, chloroplastic-like2.7e-2043.15Show/hide
Query:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK
        S  FGF  PLS+RE  DV SL+S +       G R+   WSP+P  G  C S F  L+L SP++        KV + KKI FF WQ +HGRVNT   + K
Subjt:  SFSFGFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLK

Query:  RMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWD----QFGQHL
            L+GP  C    KA E+LDHI+    FA  +WD     FG HL
Subjt:  RMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWD----QFGQHL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.2e-0630.91Show/hide
Query:  DFRVGRRDFRCWSPSPFGGFSCSSLFRWLL---LPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHIL
        D   G RD   W  S  G FS  S +  L    +P P   S F  +WKV+VP++++ F+W V +  V T +   +R   L     C +C    E + H+L
Subjt:  DFRVGRRDFRCWSPSPFGGFSCSSLFRWLL---LPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHIL

Query:  WSCAFARAAW
          C      W
Subjt:  WSCAFARAAW

Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.3e-0630.26Show/hide
Query:  PSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAW
        P P S  +   +WK+ V  KI+ F+W+ + G + T  RL  R  ++     C  C   EE + HI+++C + ++ W
Subjt:  PSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAW

AT3G09510.1 Ribonuclease H-like superfamily protein1.4e-0528.04Show/hide
Query:  WSPSPFGGFSCSSLFRWLLL--PSPQSESIFP---------RVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSC
        W+ +  G ++  S + WLL   PS    +I P         R+W + +  K++ F+W+ +   + T +RL  R    + P  C  C +  E ++H L++C
Subjt:  WSPSPFGGFSCSSLFRWLLL--PSPQSESIFP---------RVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSC

Query:  AFARAAW
         FA  AW
Subjt:  AFARAAW

AT3G25270.1 Ribonuclease H-like superfamily protein9.8e-0729.67Show/hide
Query:  PSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWDQFG---QHLNITQI
        P P    I  ++WK+K   KI+ F+W+++ G + T D L +R   +     C  C + +E   H+ + C +A+  W   G   Q L  T I
Subjt:  PSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAEEDLDHILWSCAFARAAWDQFG---QHLNITQI

AT4G29090.1 Ribonuclease H-like superfamily protein2.8e-0629.06Show/hide
Query:  GRR--DFRCWSPSPFGGFSCSSLFRWLLL------PSPQSES------IFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAE
        GRR  D   W  +  G ++  S + W+L        SPQ  S      I+ ++WK +   KI+ F+W+ +   +     L  R   L     CI C   +
Subjt:  GRR--DFRCWSPSPFGGFSCSSLFRWLLL------PSPQSES------IFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILCWKAE

Query:  EDLDHILWSCAFARAAW
        E ++H+L+ C FAR  W
Subjt:  EDLDHILWSCAFARAAW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTGCCAAAGCTGCCGGTGTCAGCCACTGTAGCGGGTCAGCTTGTGCAGAGACGAAAAAATCACATGAGTAGTACGGCGGTTGAGGCCCAGTTAATTAGTCATCA
TGAGGTAGAGAGTGGGCCTTGGGCTGGTGAGTCTTCACGAGGTTTAAAAGTTTCAGAGAGAGTGGAGATTAAGGGGCCCGAAGTAGGCCCACATAAGTTGGTCTGTGAGG
CCGTTAATGGGTCCAAGAATTTGAAGATCATGAAGCGAGCCTCGCCGAAAGCGGTTCTTAGGAAGCAGGCCGCGAATGAGGTTGATGAAGGGCCTGACGTTCCCAATGCT
CCGTGGGCCCAAGAGGAGATGCCAGATCCTTATGATTATCAGATGGAGATGGAACGAAATCTTGGGCTTGGGCCGTCAGAAAATCTATTAGGAGATGAAGGATATGCGTC
TGACCCATCCGTGGTAAGTTATTCAGAAGACGACTCCTTCCTCTCGACGTCGTTCGCTCCTCAGGCGCCAGTTATCAGCGTGAAGGATTTGTTCGAAAATGAGGAGAAGG
AAGGCCAAGTCCAAAGGGGTCTGACGAGCAAAGAGCAGGGGTCTCGCGAGCTGCCAGTTGCTCTTAGCAATCAGGTTGAGTCGTCTGAGGGTTATTTCGCCACGGATATC
TTGCCAGGGGATGTCGTCAGGGGAAAGCAATATGGGTTTTTATCCTTACTCCGTGCCTCCCTTCATCTTCAATTCCTACCCGAGCTCTTTCCATGGTTCTGGCAGTGCCT
TTCCCCACCAGGTGTATTATTCAATGGGAGAGAGTGTCTCAAATTTGGTCCCAATTCCTATGCCGTCGGGGAGGGTGTGGGGGGTACAGTCAAGCGGAGGTATGTGGATT
GGGAGATTCTTGAAGCTGAAGGGGCCTCTGGAGGGATTGCTATTTTATGGGATAGTAGGGTGGTTGCTCCGACTGAAGTCATAAAAGGGAGCACTCCTTCGTTTTCTTTT
GGCTTCAGTCGTCCGTTGTCCAATAGGGAAACGACGGATGTTGTGTCCCTTATATCTTTGATTGAGGAGTTCGATTTCAGGGTGGGGAGGAGGGATTTTCGTTGTTGGAG
CCCTAGTCCTTTTGGTGGGTTCTCTTGTAGCTCCCTTTTCCGTTGGCTTTTGCTCCCTTCTCCCCAAAGTGAGTCCATTTTTCCGCGTGTGTGGAAGGTTAAAGTACCGA
AGAAGATTAGGTTTTTTATGTGGCAAGTTATCCATGGCAGGGTTAATACCTACGATCGTCTGTTGAAAAGGATGCCCTCTTTGGTTGGTCCGTTTTGCTGTATTCTGTGT
TGGAAGGCGGAGGAAGATCTGGATCATATTCTGTGGAGTTGTGCCTTTGCGCGTGCTGCGTGGGATCAGTTTGGTCAGCATCTAAACATTACCCAAATTGAAAACCCAAA
GCCATTAGACCATGGTCAACCACTTCTAAGGCGTTCAGGTAGTGGGTATTTGCTGGATGTCGAAATTAAGGCTATACAGCAACTGGACAGCAAGCAATCAACCACATATT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTGCCAAAGCTGCCGGTGTCAGCCACTGTAGCGGGTCAGCTTGTGCAGAGACGAAAAAATCACATGAGTAGTACGGCGGTTGAGGCCCAGTTAATTAGTCATCA
TGAGGTAGAGAGTGGGCCTTGGGCTGGTGAGTCTTCACGAGGTTTAAAAGTTTCAGAGAGAGTGGAGATTAAGGGGCCCGAAGTAGGCCCACATAAGTTGGTCTGTGAGG
CCGTTAATGGGTCCAAGAATTTGAAGATCATGAAGCGAGCCTCGCCGAAAGCGGTTCTTAGGAAGCAGGCCGCGAATGAGGTTGATGAAGGGCCTGACGTTCCCAATGCT
CCGTGGGCCCAAGAGGAGATGCCAGATCCTTATGATTATCAGATGGAGATGGAACGAAATCTTGGGCTTGGGCCGTCAGAAAATCTATTAGGAGATGAAGGATATGCGTC
TGACCCATCCGTGGTAAGTTATTCAGAAGACGACTCCTTCCTCTCGACGTCGTTCGCTCCTCAGGCGCCAGTTATCAGCGTGAAGGATTTGTTCGAAAATGAGGAGAAGG
AAGGCCAAGTCCAAAGGGGTCTGACGAGCAAAGAGCAGGGGTCTCGCGAGCTGCCAGTTGCTCTTAGCAATCAGGTTGAGTCGTCTGAGGGTTATTTCGCCACGGATATC
TTGCCAGGGGATGTCGTCAGGGGAAAGCAATATGGGTTTTTATCCTTACTCCGTGCCTCCCTTCATCTTCAATTCCTACCCGAGCTCTTTCCATGGTTCTGGCAGTGCCT
TTCCCCACCAGGTGTATTATTCAATGGGAGAGAGTGTCTCAAATTTGGTCCCAATTCCTATGCCGTCGGGGAGGGTGTGGGGGGTACAGTCAAGCGGAGGTATGTGGATT
GGGAGATTCTTGAAGCTGAAGGGGCCTCTGGAGGGATTGCTATTTTATGGGATAGTAGGGTGGTTGCTCCGACTGAAGTCATAAAAGGGAGCACTCCTTCGTTTTCTTTT
GGCTTCAGTCGTCCGTTGTCCAATAGGGAAACGACGGATGTTGTGTCCCTTATATCTTTGATTGAGGAGTTCGATTTCAGGGTGGGGAGGAGGGATTTTCGTTGTTGGAG
CCCTAGTCCTTTTGGTGGGTTCTCTTGTAGCTCCCTTTTCCGTTGGCTTTTGCTCCCTTCTCCCCAAAGTGAGTCCATTTTTCCGCGTGTGTGGAAGGTTAAAGTACCGA
AGAAGATTAGGTTTTTTATGTGGCAAGTTATCCATGGCAGGGTTAATACCTACGATCGTCTGTTGAAAAGGATGCCCTCTTTGGTTGGTCCGTTTTGCTGTATTCTGTGT
TGGAAGGCGGAGGAAGATCTGGATCATATTCTGTGGAGTTGTGCCTTTGCGCGTGCTGCGTGGGATCAGTTTGGTCAGCATCTAAACATTACCCAAATTGAAAACCCAAA
GCCATTAGACCATGGTCAACCACTTCTAAGGCGTTCAGGTAGTGGGTATTTGCTGGATGTCGAAATTAAGGCTATACAGCAACTGGACAGCAAGCAATCAACCACATATT
AA
Protein sequenceShow/hide protein sequence
MVLPKLPVSATVAGQLVQRRKNHMSSTAVEAQLISHHEVESGPWAGESSRGLKVSERVEIKGPEVGPHKLVCEAVNGSKNLKIMKRASPKAVLRKQAANEVDEGPDVPNA
PWAQEEMPDPYDYQMEMERNLGLGPSENLLGDEGYASDPSVVSYSEDDSFLSTSFAPQAPVISVKDLFENEEKEGQVQRGLTSKEQGSRELPVALSNQVESSEGYFATDI
LPGDVVRGKQYGFLSLLRASLHLQFLPELFPWFWQCLSPPGVLFNGRECLKFGPNSYAVGEGVGGTVKRRYVDWEILEAEGASGGIAILWDSRVVAPTEVIKGSTPSFSF
GFSRPLSNRETTDVVSLISLIEEFDFRVGRRDFRCWSPSPFGGFSCSSLFRWLLLPSPQSESIFPRVWKVKVPKKIRFFMWQVIHGRVNTYDRLLKRMPSLVGPFCCILC
WKAEEDLDHILWSCAFARAAWDQFGQHLNITQIENPKPLDHGQPLLRRSGSGYLLDVEIKAIQQLDSKQSTTY