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Spg027060 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027060
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPepsin-retropepsin like protein
Genome locationscaffold8:3339920..3346586
RNA-Seq ExpressionSpg027060
SyntenySpg027060
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXI69409.1 pepsin-retropepsin like protein [Olea europaea subsp. europaea]7.4e-0436.36Show/hide
Query:  ASVSNTRWVVSHSVTRISRHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFALKDEIAEDDAMV
        AS S +   +    ++  R H G+C  G+ VCFRCG+ GH  + CPT  + K +           Q  K KARVFAL  + AE+++ V
Subjt:  ASVSNTRWVVSHSVTRISRHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFALKDEIAEDDAMV
XP_022156067.1 uncharacterized protein LOC111023035 [Momordica charantia]3.3e-0441.1Show/hide
Query:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRG-EIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
        ++H G C  G+++CFRC ++GH+A+ CP  G   +A G     A    QGG Q+ARVFAL + ++   +A+VT
Subjt:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRG-EIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]2.5e-0441.67Show/hide
Query:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
        + H GQC +G K CFRCG++GH+A+ CP                V  QG  Q+ARVFAL + E A+ + +VT
Subjt:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
TrEMBL top hitse value%identityAlignment
A0A385A1M9 Pepsin-retropepsin like protein3.6e-0436.36Show/hide
Query:  ASVSNTRWVVSHSVTRISRHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFALKDEIAEDDAMV
        AS S +   +    ++  R H G+C  G+ VCFRCG+ GH  + CPT  + K +           Q  K KARVFAL  + AE+++ V
Subjt:  ASVSNTRWVVSHSVTRISRHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFALKDEIAEDDAMV
A0A6J1DL73 uncharacterized protein LOC1110221446.1e-0440.28Show/hide
Query:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
        + H GQC +G K CFRCG++ H+A+ CP             +  V  QG  Q+ARVFAL + E A+ + +VT
Subjt:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
A0A6J1DR22 uncharacterized protein LOC1110230351.6e-0441.1Show/hide
Query:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRG-EIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
        ++H G C  G+++CFRC ++GH+A+ CP  G   +A G     A    QGG Q+ARVFAL + ++   +A+VT
Subjt:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRG-EIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
A0A6J1DUM2 uncharacterized protein LOC1110232471.2e-0441.67Show/hide
Query:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
        + H GQC +G K CFRCG++GH+A+ CP                V  QG  Q+ARVFAL + E A+ + +VT
Subjt:  RHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFAL-KDEIAEDDAMVT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACATAGTGTCACCAGGATAAGCAGGCACCACGTGGGCCAATGCGAGTC
AGGTGAGAAAGTTTGCTTCCGATGTGGCCAAGATGGACACTATGCCAAGTGGTGTCCCACCAGAGGCGAGATAAAGGCTGAAGGACCGGCTCTGAAGGCCGCTCAGGTTC
CTGGTCAAGGTGGCAAGCAGAAAGCTCGTGTTTTTGCCCTGAAGGATGAAATCGCAGAGGATGATGCCATGGTGACAGCCGTTCGCGTCACCTGCCTAGCCGCCGCCGCC
GTCGTTGAGTTGCTGCCGCCCAGTTCGCGCTGCCGCCGCTGCTCCTCGTCGCAGCCGTTCGGTTCGTGCCGTTGCCCAGGTCCTGCAGCCGCCGCCGTCGACATGCCTAG
CCGTGGGTCGTCTTCTCTTCGCGTCGTCCCTCCCTCTTCGCGCGCCGTCTCCCCCAGCCGCCGTCGCCTTCCCTCGCGCCGCGCCCGGATAGTGTCGTTGCCGTCATTTT
TCGAGCTCTGCCGAGCCCAGATCGAAGCCGCCGTCTTTCTTCCCCTTTGTTTCACTCGATTTCGGCCAAGCTTTCGGCCTCAAATATCTCGAGTTGGTGAGATTCGGGCC
ATTTGCAGCCGCTGTACAGCACCTAATTGGGTCTGTTTGGTGCTGATCGACCTTGGACAGCACCTGTTTAAGGAGCTTAAGTGCTGTGTTAGGTTGTTCCAGCAAGGTTC
AACCCCTGTTTGGGTTTGCTTAGAGCTTGCTCTTGTATTTTCTAGCAGCGCTGATAAGCTTGTTCTGTTTGTACTTGTGGTGCGCAGCGTGGCGCGTATCGAGGATGATC
CAGACCTTGGTGGCGAGGAAGAGGACTATGAGGAAAATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACATAGTGTCACCAGGATAAGCAGGCACCACGTGGGCCAATGCGAGTC
AGGTGAGAAAGTTTGCTTCCGATGTGGCCAAGATGGACACTATGCCAAGTGGTGTCCCACCAGAGGCGAGATAAAGGCTGAAGGACCGGCTCTGAAGGCCGCTCAGGTTC
CTGGTCAAGGTGGCAAGCAGAAAGCTCGTGTTTTTGCCCTGAAGGATGAAATCGCAGAGGATGATGCCATGGTGACAGCCGTTCGCGTCACCTGCCTAGCCGCCGCCGCC
GTCGTTGAGTTGCTGCCGCCCAGTTCGCGCTGCCGCCGCTGCTCCTCGTCGCAGCCGTTCGGTTCGTGCCGTTGCCCAGGTCCTGCAGCCGCCGCCGTCGACATGCCTAG
CCGTGGGTCGTCTTCTCTTCGCGTCGTCCCTCCCTCTTCGCGCGCCGTCTCCCCCAGCCGCCGTCGCCTTCCCTCGCGCCGCGCCCGGATAGTGTCGTTGCCGTCATTTT
TCGAGCTCTGCCGAGCCCAGATCGAAGCCGCCGTCTTTCTTCCCCTTTGTTTCACTCGATTTCGGCCAAGCTTTCGGCCTCAAATATCTCGAGTTGGTGAGATTCGGGCC
ATTTGCAGCCGCTGTACAGCACCTAATTGGGTCTGTTTGGTGCTGATCGACCTTGGACAGCACCTGTTTAAGGAGCTTAAGTGCTGTGTTAGGTTGTTCCAGCAAGGTTC
AACCCCTGTTTGGGTTTGCTTAGAGCTTGCTCTTGTATTTTCTAGCAGCGCTGATAAGCTTGTTCTGTTTGTACTTGTGGTGCGCAGCGTGGCGCGTATCGAGGATGATC
CAGACCTTGGTGGCGAGGAAGAGGACTATGAGGAAAATCCCTAA
Protein sequenceShow/hide protein sequence
MSPTWMLWIIASVSNTRWVVSHSVTRISRHHVGQCESGEKVCFRCGQDGHYAKWCPTRGEIKAEGPALKAAQVPGQGGKQKARVFALKDEIAEDDAMVTAVRVTCLAAAA
VVELLPPSSRCRRCSSSQPFGSCRCPGPAAAAVDMPSRGSSSLRVVPPSSRAVSPSRRRLPSRRARIVSLPSFFELCRAQIEAAVFLPLCFTRFRPSFRPQISRVGEIRA
ICSRCTAPNWVCLVLIDLGQHLFKELKCCVRLFQQGSTPVWVCLELALVFSSSADKLVLFVLVVRSVARIEDDPDLGGEEEDYEENP