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Spg027086 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027086
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:4047326..4050733
RNA-Seq ExpressionSpg027086
SyntenySpg027086
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.3e-1249.4Show/hide
Query:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEAGLLVYLCPEDFELNNWTVMELPSFVNEIS
        EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E++++ G  VYLCP+ FEL+NW+V++LPSFVN  S
Subjt:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEAGLLVYLCPEDFELNNWTVMELPSFVNEIS

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.4e-1438.1Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   I TPM  LFEIL  +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN
        +Q      Q   +D++E  S  E      K K L  L   +P+   N
Subjt:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.6e-0553.23Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.5e-1362.32Show/hide
Query:  IVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLT
        I TPM ELFEILL +GYI VE   L    + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LT
Subjt:  IVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLT

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.7e-1541.3Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   I TP  ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP
          S +   +    +V + E  S   K KRL    + +P
Subjt:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.8e-0945.45Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]8.2e-1546.02Show/hide
Query:  IVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE
        I TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV+         +V+     E  I E  S   
Subjt:  IVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE

Query:  KEKRLARLENREP
        K KRL    + +P
Subjt:  KEKRLARLENREP

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.3e-1543.9Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   I TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE
        +       Q   ++I+E+ S  E
Subjt:  SQKMVQLPQYGEVDIIEECSRQE

TrEMBL top hitse value%identityAlignment
A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-1438.1Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   I TPM  LFEIL  +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN
        +Q      Q   +D++E  S  E      K K L  L   +P+   N
Subjt:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222317.5e-0653.23Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.7e-1350Show/hide
Query:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEAGLLVYLCPEDFELNNWTVMELPSFVNEISK
        EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E++++ G  VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEAGLLVYLCPEDFELNNWTVMELPSFVNEISK

A0A6J1DZ90 Ribonuclease H8.0e-1641.3Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   I TP  ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP
          S +   +    +V + E  S   K KRL    + +P
Subjt:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP

A0A6J1DZ90 Ribonuclease H8.6e-1045.45Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP

A0A6J1DZ90 Ribonuclease H4.0e-1546.02Show/hide
Query:  IVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE
        I TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV+         +V+     E  I E  S   
Subjt:  IVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE

Query:  KEKRLARLENREP
        K KRL    + +P
Subjt:  KEKRLARLENREP

A0A6J1E2J7 Ribonuclease H6.1e-1643.9Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   I TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SIVTPMGELFEILLSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE
        +       Q   ++I+E+ S  E
Subjt:  SQKMVQLPQYGEVDIIEECSRQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGAGCAAGTGCCTATACACAATCAACCTGGATTTTCACTACCCACAGAGAGCATAGTGACTCCCATGGGAGAACTATTCGAAATATTATTGAGT
AATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATATGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCA
ATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAG
AATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGA
ATAATTCATCCAGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCTCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTG
GACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGAGCAAGTGCCTATACACAATCAACCTGGATTTTCACTACCCACAGAGAGCATAGTGACTCCCATGGGAGAACTATTCGAAATATTATTGAGT
AATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATATGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCA
ATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAG
AATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGA
ATAATTCATCCAGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCTCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTG
GACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPIHNQPGFSLPTESIVTPMGELFEILLS
NGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREPKYQMNIIPHLHDTFIFAG
IIHPESQDPAVMAIIEQKKEAGLLVYLCPEDFELNNWTVMELPSFVNEISK