; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027102 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027102
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold8:3072767..3081162
RNA-Seq ExpressionSpg027102
SyntenySpg027102
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039601.1 uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa]8.4e-2137.19Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA
        YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYA
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA

Query:  PQFESIPDQSCWLDPNLRKVL
        PQF+ +P +  W+ P    VL
Subjt:  PQFESIPDQSCWLDPNLRKVL

KAA0047926.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.8e-2238.71Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKL--CERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA
        YA+EK+++W AR+++H V  +D + G+  + T  + ++ RGG    +KL   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++  Y+ CYA
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKL--CERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA

Query:  PQFESIPDQSCWLDP-NLRKVLPD
        PQF+ +P ++ W+ P ++  +LPD
Subjt:  PQFESIPDQSCWLDP-NLRKVLPD

RVX19406.1 hypothetical protein CK203_008540 [Vitis vinifera]3.2e-2040.98Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISM-RGGTRNRVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAP
        YA+ K+ ++++RAN HT NIF  +  I ++TT  +   M +G     VKL ERTC CNKW+ +GIPCSH +A      +D   F+  ++++  Y  CY P
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISM-RGGTRNRVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAP

Query:  QFESIPDQSCWLDPNLRKVLPD
        QF  IP Q+ W +PN   V P+
Subjt:  QFESIPDQSCWLDPNLRKVLPD

TYK01705.1 uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa]8.4e-2137.19Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA
        YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYA
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA

Query:  PQFESIPDQSCWLDPNLRKVL
        PQF+ +P +  W+ P    VL
Subjt:  PQFESIPDQSCWLDPNLRKVL

XP_008457265.1 PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo]2.2e-2137.7Show/hide
Query:  RYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCY
        RYA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CY
Subjt:  RYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCY

Query:  APQFESIPDQSCWLDPNLRKVL
        APQF+ +P +  W+ P    VL
Subjt:  APQFESIPDQSCWLDPNLRKVL

TrEMBL top hitse value%identityAlignment
A0A1S3C4P2 uncharacterized protein LOC1034969911.1e-2137.7Show/hide
Query:  RYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCY
        RYA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CY
Subjt:  RYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCY

Query:  APQFESIPDQSCWLDPNLRKVL
        APQF+ +P +  W+ P    VL
Subjt:  APQFESIPDQSCWLDPNLRKVL

A0A438KDW5 SWIM-type domain-containing protein1.5e-2040.98Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISM-RGGTRNRVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAP
        YA+ K+ ++++RAN HT NIF  +  I ++TT  +   M +G     VKL ERTC CNKW+ +GIPCSH +A      +D   F+  ++++  Y  CY P
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISM-RGGTRNRVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAP

Query:  QFESIPDQSCWLDPNLRKVLPD
        QF  IP Q+ W +PN   V P+
Subjt:  QFESIPDQSCWLDPNLRKVLPD

A0A5A7TD93 SWIM-type domain-containing protein4.1e-2137.19Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA
        YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYA
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA

Query:  PQFESIPDQSCWLDPNLRKVL
        PQF+ +P +  W+ P    VL
Subjt:  PQFESIPDQSCWLDPNLRKVL

A0A5A7U115 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.8e-2238.71Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKL--CERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA
        YA+EK+++W AR+++H V  +D + G+  + T  + ++ RGG    +KL   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++  Y+ CYA
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKL--CERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA

Query:  PQFESIPDQSCWLDP-NLRKVLPD
        PQF+ +P ++ W+ P ++  +LPD
Subjt:  PQFESIPDQSCWLDP-NLRKVLPD

A0A5D3BR89 SWIM-type domain-containing protein4.1e-2137.19Show/hide
Query:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA
        YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNKW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYA
Subjt:  YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYA

Query:  PQFESIPDQSCWLDPNLRKVL
        PQF+ +P +  W+ P    VL
Subjt:  PQFESIPDQSCWLDPNLRKVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCGGCGATTTCCTGTGATTCCGACTGTGGGTTTTCTCCTTCAACAAGCTTTGGTGTTTATTATGCACCTACAGCAGCTCATTCAAGAGCTACACGAAGAAG
TCCTAGAGCTAAAGCTAAGGGAAAGAAGGTTGCTCAAAGAGAAGAGATTGAAGAAGAGAAAATTGTGACTGAGGAACAAGAAGAAGAAGCTCAAATTCCAACTCCACAAA
GCCCTCTTGCAAAGAAGAAGAATTCCAAAAAGAAAGGAAAGGAGTCTATGCTAACAGTGAGTGAAAGTCCAAGGGAGAAATTCATCAATGTTGCTGCTAAAGCAAAATTT
GAAGAGCTGAAAGAGAGGGAGCTTCTTCCGGAGAGAGGCTTTGAATCAGACATGAAAAATCAACGAATGCTACAACTTGCCAGGACTATCCTCAAGCTATCTTTAACTCA
ATGGAGATTGCCCCATCAAACGAGTAGGCTCCAATTAGCCTTAGTAACATGTGGAGTTGAAGGAGCAAGATGGAAAATGTCCAGAAATTCCAATAGGACACTTTTGACCG
CTTATATGAAGCCTGAAGCTAACGTGTGGTTGACATTTGTGAGAAACAGGCTGCTACCAACTACTCATGACACTACAGTTCAAGTTGAAAAGGATGAGGAGGTTTTGATG
GATAACGGCATTATAGACTCGACGTCTTTAGCAAGACTTCAAGGAGCAAGTAAGGGGAGAAAGAGCACCAATAATATAGTCTGTGGAATTCATGAACTTTTGAAACAACC
AAGAAGAATGATGCAACACATGGAGCATAATGAAGTTCAACAGAAGCTATACTGGGAATACGCTCATCAGAGGGACTATGCTATGGAAAAGGCGTTTGAATTTGGCTCTG
AGGAACTTCCTCAACCTTTCTCTCAATTCCCTGAAGGTGTGCTCAACCCGTGGTGCCCATCCTCATCTATGGAGAAGATGATGATGCTGCTGAAGGTCAAGAAGATTGAA
GAAGGAAAAGAAGGGAGTCTGTTGTTGTTGTTTGCTTGCTATCTTTATGGCCCTGCCCTCTCTATGGCACGAGAGGGATTTCTGTTTCTGGTTGGACCTCAAACAGGTTG
TTCATTAGAGGAGCACTTGTACTTAGATGTAGAGGTAATTCCTCCAAATGTTAGGTATGCGGTTGAGAAATTGATTCGTTGGAAAGCACGGGCCAACAGGCACACAGTCA
ATATATTCGATCACGCAACGGGGATATGTGACATAACAACTCCAACGAACCTAATATCAATGAGGGGTGGAACTCGAAATCGAGTGAAGTTATGTGAGAGGACTTGTGTG
TGCAATAAGTGGCGAGTGTATGGGATCCCATGTTCTCACGCCATTGCTGCCTACAAAAGCCTTGGTCTAGATTACTTGCACTTCATACAAGATTATTTCCAACTCCTAGC
TTATTTGTTGTGTTATGCACCACAGTTTGAATCGATTCCTGATCAAAGTTGTTGGCTTGACCCAAATTTGCGAAAGGTTCTTCCAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTTCGGCGATTTCCTGTGATTCCGACTGTGGGTTTTCTCCTTCAACAAGCTTTGGTGTTTATTATGCACCTACAGCAGCTCATTCAAGAGCTACACGAAGAAG
TCCTAGAGCTAAAGCTAAGGGAAAGAAGGTTGCTCAAAGAGAAGAGATTGAAGAAGAGAAAATTGTGACTGAGGAACAAGAAGAAGAAGCTCAAATTCCAACTCCACAAA
GCCCTCTTGCAAAGAAGAAGAATTCCAAAAAGAAAGGAAAGGAGTCTATGCTAACAGTGAGTGAAAGTCCAAGGGAGAAATTCATCAATGTTGCTGCTAAAGCAAAATTT
GAAGAGCTGAAAGAGAGGGAGCTTCTTCCGGAGAGAGGCTTTGAATCAGACATGAAAAATCAACGAATGCTACAACTTGCCAGGACTATCCTCAAGCTATCTTTAACTCA
ATGGAGATTGCCCCATCAAACGAGTAGGCTCCAATTAGCCTTAGTAACATGTGGAGTTGAAGGAGCAAGATGGAAAATGTCCAGAAATTCCAATAGGACACTTTTGACCG
CTTATATGAAGCCTGAAGCTAACGTGTGGTTGACATTTGTGAGAAACAGGCTGCTACCAACTACTCATGACACTACAGTTCAAGTTGAAAAGGATGAGGAGGTTTTGATG
GATAACGGCATTATAGACTCGACGTCTTTAGCAAGACTTCAAGGAGCAAGTAAGGGGAGAAAGAGCACCAATAATATAGTCTGTGGAATTCATGAACTTTTGAAACAACC
AAGAAGAATGATGCAACACATGGAGCATAATGAAGTTCAACAGAAGCTATACTGGGAATACGCTCATCAGAGGGACTATGCTATGGAAAAGGCGTTTGAATTTGGCTCTG
AGGAACTTCCTCAACCTTTCTCTCAATTCCCTGAAGGTGTGCTCAACCCGTGGTGCCCATCCTCATCTATGGAGAAGATGATGATGCTGCTGAAGGTCAAGAAGATTGAA
GAAGGAAAAGAAGGGAGTCTGTTGTTGTTGTTTGCTTGCTATCTTTATGGCCCTGCCCTCTCTATGGCACGAGAGGGATTTCTGTTTCTGGTTGGACCTCAAACAGGTTG
TTCATTAGAGGAGCACTTGTACTTAGATGTAGAGGTAATTCCTCCAAATGTTAGGTATGCGGTTGAGAAATTGATTCGTTGGAAAGCACGGGCCAACAGGCACACAGTCA
ATATATTCGATCACGCAACGGGGATATGTGACATAACAACTCCAACGAACCTAATATCAATGAGGGGTGGAACTCGAAATCGAGTGAAGTTATGTGAGAGGACTTGTGTG
TGCAATAAGTGGCGAGTGTATGGGATCCCATGTTCTCACGCCATTGCTGCCTACAAAAGCCTTGGTCTAGATTACTTGCACTTCATACAAGATTATTTCCAACTCCTAGC
TTATTTGTTGTGTTATGCACCACAGTTTGAATCGATTCCTGATCAAAGTTGTTGGCTTGACCCAAATTTGCGAAAGGTTCTTCCAGATTAG
Protein sequenceShow/hide protein sequence
MAASAISCDSDCGFSPSTSFGVYYAPTAAHSRATRRSPRAKAKGKKVAQREEIEEEKIVTEEQEEEAQIPTPQSPLAKKKNSKKKGKESMLTVSESPREKFINVAAKAKF
EELKERELLPERGFESDMKNQRMLQLARTILKLSLTQWRLPHQTSRLQLALVTCGVEGARWKMSRNSNRTLLTAYMKPEANVWLTFVRNRLLPTTHDTTVQVEKDEEVLM
DNGIIDSTSLARLQGASKGRKSTNNIVCGIHELLKQPRRMMQHMEHNEVQQKLYWEYAHQRDYAMEKAFEFGSEELPQPFSQFPEGVLNPWCPSSSMEKMMMLLKVKKIE
EGKEGSLLLLFACYLYGPALSMAREGFLFLVGPQTGCSLEEHLYLDVEVIPPNVRYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKLCERTCV
CNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKVLPD