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Spg027144 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027144
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:8454513..8456582
RNA-Seq ExpressionSpg027144
SyntenySpg027144
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1258.23Show/hide
Query:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH
        G+Q      +   PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+EL+ ESV++ ++F  ++    RAA +
Subjt:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-1283.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+EL+ ESV++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1258.23Show/hide
Query:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH
        G+Q      +   PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+EL+ ESV++ ++F  ++    RAA +
Subjt:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.4e-1283.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+EL+ ESV++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-1281.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+EL++E V++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein5.6e-1358.23Show/hide
Query:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH
        G+Q      +   PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+EL+ ESV++ ++F  ++    RAA +
Subjt:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH

A0A5A7V9N3 Reverse transcriptase1.6e-1283.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+EL+ ESV++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI

A0A5D3DR18 Gag/pol protein5.6e-1358.23Show/hide
Query:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH
        G+Q      +   PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+EL+ ESV++ ++F  ++    RAA +
Subjt:  GVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH

A0A5D3DSY7 Putative Retrotransposon protein1.6e-1283.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+EL+ ESV++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI

A0A5D3DX39 Reverse transcriptase3.7e-1281.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+EL++E V++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCTTTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTGGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTT
CCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTTCATTGAGTCTGTCTATATTGTAATTGTTTTTGTTATTTTCCAAACCGAGTATGTCAGGGCTGCACCCCAT
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCTTTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTGGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTT
CCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTTCATTGAGTCTGTCTATATTGTAATTGTTTTTGTTATTTTCCAAACCGAGTATGTCAGGGCTGCACCCCAT
Protein sequenceShow/hide protein sequence
MIFEMENRAQNFRANQEDLWFSLVFRAFWGVQVESEALLGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELFIESVYIVIVFVIFQTEYVRAAPH