; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027158 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027158
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold8:4159153..4164271
RNA-Seq ExpressionSpg027158
SyntenySpg027158
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.9e-0664.44Show/hide
Query:  VSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        V  E++ VRV   PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]1.9e-1052Show/hide
Query:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECS
        D A FVFDT+ LI+ VHV DM+         VRV   PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG +   S
Subjt:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECS
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.3e-0673.68Show/hide
Query:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRV   PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0067030.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]3.8e-0650Show/hide
Query:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
        DTA FVFDT+ LI+ VH                     TQYA+ FGDKTEW AG++ TQ+GIHSFP L
Subjt:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.1e-0862.5Show/hide
Query:  WVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKW
        ++RV   PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+CSL+W
Subjt:  WVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKW
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.4e-0664.44Show/hide
Query:  VSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        V  E++ VRV   PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7THR9 Uncharacterized protein9.4e-1152Show/hide
Query:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECS
        D A FVFDT+ LI+ VHV DM+         VRV   PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG +   S
Subjt:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECS
A0A5A7VFG5 Ty1-copia retrotransposon protein6.3e-0773.68Show/hide
Query:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRV   PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7VIJ2 Cysteine-rich RLK (Receptor-like protein kinase) 81.8e-0650Show/hide
Query:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
        DTA FVFDT+ LI+ VH                     TQYA+ FGDKTEW AG++ TQ+GIHSFP L
Subjt:  DTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-945.2e-0962.5Show/hide
Query:  WVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKW
        ++RV   PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+CSL+W
Subjt:  WVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCAACATGGGAATCTTTGAAACCCATCTCTCATGAGGGCATCAAAAGCTCCTTGGATGCCTCTTCGGATGCCTCCCGTATGGGCATCCCGAATTTCCTAGGTAT
CCAACATTACCACAAAACAAACGAGCCGAATCTGAGTCGCCGTCGCCTAAGCTCGTCGCGCCGAACCGTGGGTCGCCGTCTCTCCGCGAGCTCTCTCCCTCCGCGAGCTC
TCTCTCCTCGACCTCTCTCCCTCCGCGAGCTCCCTCTCCGTCCAGCCCAAGCACGTGCCGCCGCCGCTGTTTGTCGAGCTGCGCCATGCCCAATCGGAGCCGCCGCCTCT
CTCTCTCTGTCTCCGCATTTTTCAATCGTAGCCTCGTGGATCTTGCGAGGACAGCAGCTCGGAGCCTCATTTCCTCGCTTTTTCGCTTCTGTCCAGCAGCGTCATTGGGC
GTTTTCGACGTCATTTAGCGATTCCGCGCCGCCTAAGTGTTCGACTGAGTTCGATACACTTCAACTCGAATACCCACTGCTCAAGGAACGTTCTAACACGCTGTTCGAGG
TTAGACTAACCCGTCTAGCTTGGAAGCGGGTTCGTTTGGAGCTTATTTTTGGTTGTGTTAGGCTTGCTAAGGTTGCTTGGAAGCATTATGCGCTAGCTTTGATTCTGTTA
TTTGATAATTCTGTTAGGGCCATTTTAAGCCGTTATGCTGCCGAAATTTTCGAAGTTCCTCTTGAGCCAGGAGAGGATAGCACGCCTTTGTTCAAGACCCGAAATCAGCC
CTTAAGGGAACACACGTCTACTTACCCAAATAAGGGAAGAAGCGAATTCCATCTTGTAGTGTTATGTTCCCAGCCCCCACTCGGTCTTGCCCCTGCAATGTGGTTACTAT
TTTTCGGTCCGGTCTTATGTAAACTCATTGCATCGGATACCCCTACTCGCATGTCTCCTACATGGATGCTTTGGATCAATGCATCTGTATCGAATACAAAGCGGGTCGTA
TCTCATAGTGTCACCAGGATAAGGGATAAGGCTGGGTACCTTATCCTAGTAACACTATGTGATACGGCCCGCTTTGTATTTGATACAGACGTATTAATCCAAGGCGTCCA
TGTAGGAGACATGCAAGCGGGCGTATCCTATGAAATGACATGGGTGAGAGTGACCAATACGCCAACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTG
GGGACATGACAACACAAGAAGGAATTCACTCATTCCCGCTTCTAGGAGAAGTTGATGAGTGTTCCCTTAAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCAACATGGGAATCTTTGAAACCCATCTCTCATGAGGGCATCAAAAGCTCCTTGGATGCCTCTTCGGATGCCTCCCGTATGGGCATCCCGAATTTCCTAGGTAT
CCAACATTACCACAAAACAAACGAGCCGAATCTGAGTCGCCGTCGCCTAAGCTCGTCGCGCCGAACCGTGGGTCGCCGTCTCTCCGCGAGCTCTCTCCCTCCGCGAGCTC
TCTCTCCTCGACCTCTCTCCCTCCGCGAGCTCCCTCTCCGTCCAGCCCAAGCACGTGCCGCCGCCGCTGTTTGTCGAGCTGCGCCATGCCCAATCGGAGCCGCCGCCTCT
CTCTCTCTGTCTCCGCATTTTTCAATCGTAGCCTCGTGGATCTTGCGAGGACAGCAGCTCGGAGCCTCATTTCCTCGCTTTTTCGCTTCTGTCCAGCAGCGTCATTGGGC
GTTTTCGACGTCATTTAGCGATTCCGCGCCGCCTAAGTGTTCGACTGAGTTCGATACACTTCAACTCGAATACCCACTGCTCAAGGAACGTTCTAACACGCTGTTCGAGG
TTAGACTAACCCGTCTAGCTTGGAAGCGGGTTCGTTTGGAGCTTATTTTTGGTTGTGTTAGGCTTGCTAAGGTTGCTTGGAAGCATTATGCGCTAGCTTTGATTCTGTTA
TTTGATAATTCTGTTAGGGCCATTTTAAGCCGTTATGCTGCCGAAATTTTCGAAGTTCCTCTTGAGCCAGGAGAGGATAGCACGCCTTTGTTCAAGACCCGAAATCAGCC
CTTAAGGGAACACACGTCTACTTACCCAAATAAGGGAAGAAGCGAATTCCATCTTGTAGTGTTATGTTCCCAGCCCCCACTCGGTCTTGCCCCTGCAATGTGGTTACTAT
TTTTCGGTCCGGTCTTATGTAAACTCATTGCATCGGATACCCCTACTCGCATGTCTCCTACATGGATGCTTTGGATCAATGCATCTGTATCGAATACAAAGCGGGTCGTA
TCTCATAGTGTCACCAGGATAAGGGATAAGGCTGGGTACCTTATCCTAGTAACACTATGTGATACGGCCCGCTTTGTATTTGATACAGACGTATTAATCCAAGGCGTCCA
TGTAGGAGACATGCAAGCGGGCGTATCCTATGAAATGACATGGGTGAGAGTGACCAATACGCCAACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTG
GGGACATGACAACACAAGAAGGAATTCACTCATTCCCGCTTCTAGGAGAAGTTGATGAGTGTTCCCTTAAGTGGTGA
Protein sequenceShow/hide protein sequence
MPSTWESLKPISHEGIKSSLDASSDASRMGIPNFLGIQHYHKTNEPNLSRRRLSSSRRTVGRRLSASSLPPRALSPRPLSLRELPLRPAQARAAAAVCRAAPCPIGAAAS
LSLSPHFSIVASWILRGQQLGASFPRFFASVQQRHWAFSTSFSDSAPPKCSTEFDTLQLEYPLLKERSNTLFEVRLTRLAWKRVRLELIFGCVRLAKVAWKHYALALILL
FDNSVRAILSRYAAEIFEVPLEPGEDSTPLFKTRNQPLREHTSTYPNKGRSEFHLVVLCSQPPLGLAPAMWLLFFGPVLCKLIASDTPTRMSPTWMLWINASVSNTKRVV
SHSVTRIRDKAGYLILVTLCDTARFVFDTDVLIQGVHVGDMQAGVSYEMTWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKW