CuGenDBv2

Gene ID	Spg027208
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CDT1-like protein b
Genome location	scaffold8:5851433..5874356
RNA-Seq Expression	Spg027208
Synteny	Spg027208
Gene Ontology terms	GO:0000076 - DNA replication checkpoint (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process) GO:0071163 - DNA replication preinitiation complex assembly (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0070182 - DNA polymerase binding (molecular function)
InterPro domains	IPR036390 - Winged helix DNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571515.1 CDT1-like protein a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-27

54.14

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Query:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV
        SV    +L       S+F +S+  V+  + F+G         S+ C +IE    RRFS+GHLAQ+KFI+P+AIE +KV++FDE+TSC+K DLHISFNF V
Subjt:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV

Query:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        LDN+DNLE+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

KAG7011262.1 CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-28

73.03

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Query:  SCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        S SE++G ECRRFS+GHLAQ+KFI+P+AIE +KV++FDE+TSC+K DLHISFNF VLDN+DNLE+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  SCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

XP_022963958.1 CDT1-like protein b [Cucurbita moschata]

3.8e-27

54.14

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Query:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV
        SV    +L     + S+F +S+  V+  + F+G         S+ C +IE    RRFS+GHLAQ+KFI+P+AIE +KV++FDE+TSC+K DLHISFNF V
Subjt:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV

Query:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        LDN+DNLE+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

XP_022967387.1 CDT1-like protein b [Cucurbita maxima]

5.0e-27

54.14

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Query:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV
        SV    +L       S+F +S+  V+  + F+G         S+ C +IE    RRFS+GHLAQ+KFI+P+AIE +KVL+FDE+TSC+K DLHISFNFGV
Subjt:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV

Query:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        LDN+D++E+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

XP_023553630.1 CDT1-like protein b [Cucurbita pepo subsp. pepo]

2.1e-25

52.63

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Query:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV
        SV    +L       S+F +S+  V+  + F+G         S+ C +IE    RRFS+GHLAQ+KFI+P+AIE +KV++FDE+TSC+K DLHISFNF V
Subjt:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV

Query:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        LD +D+LE+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEP6 CDT1-like protein b

2.2e-20

61.54

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Query:  SSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        S+ C ++E    RRFS+GHLAQ KFILP+AI  +KV+V+DEQT C+K DLHISFNF VL+N++     +Q MQLRKLFR R SEF+SS+PE
Subjt:  SSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

A0A5D3BZJ0 CDT1-like protein b

2.2e-20

61.54

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Query:  SSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        S+ C ++E    RRFS+GHLAQ KFILP+AI  +KV+V+DEQT C+K DLHISFNF VL+N++     +Q MQLRKLFR R SEF+SS+PE
Subjt:  SSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

A0A6J1CX08 CDT1-like protein b

3.0e-25

69.23

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Query:  SSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        S+ C +IE    RRFS+GHLAQLKFILP+AIE +KV VFDE+TSC+K DLHISFN GVLDNQ++LE+ +QN+ LRKLF  R SEF+SSHPE
Subjt:  SSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

A0A6J1HJE5 CDT1-like protein b

1.9e-27

54.14

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Query:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV
        SV    +L     + S+F +S+  V+  + F+G         S+ C +IE    RRFS+GHLAQ+KFI+P+AIE +KV++FDE+TSC+K DLHISFNF V
Subjt:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV

Query:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        LDN+DNLE+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

A0A6J1HQP8 CDT1-like protein b

2.4e-27

54.14

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Query:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV
        SV    +L       S+F +S+  V+  + F+G         S+ C +IE    RRFS+GHLAQ+KFI+P+AIE +KVL+FDE+TSC+K DLHISFNFGV
Subjt:  SVSSLVRLYLHLRMSSRFEESI--VLAFVGFQGQHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGV

Query:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        LDN+D++E+ NQ MQLRKLF+ R SEF SSHPE
Subjt:  LDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

SwissProt top hits

e value

%identity

Alignment

Q9M1S9 CDT1-like protein b

1.2e-10

39.56

Show/hide

Query:  CSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPEENL
        C +IE    R FS+ HLAQ+K I P+AIE ++VL F E T C+K  LHI  N   +  +D +    + M+LRK+F  +  +F  +HP++ +
Subjt:  CSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPEENL

Q9SJW9 CDT1-like protein a, chloroplastic

1.2e-15

41.67

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Query:  AKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        +K   S+   +IE    RRF + HLAQ+K ILP+AIE ++VL+ DE T C+K DLH++ N   ++  D  +S ++ + LRK+FR R ++F+ +HP+
Subjt:  AKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

Arabidopsis top hits

e value

%identity

Alignment

AT2G31270.1 homolog of yeast CDT1 A

8.6e-17

41.67

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Query:  AKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE
        +K   S+   +IE    RRF + HLAQ+K ILP+AIE ++VL+ DE T C+K DLH++ N   ++  D  +S ++ + LRK+FR R ++F+ +HP+
Subjt:  AKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPE

AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B

8.3e-12

39.56

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Query:  CSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPEENL
        C +IE    R FS+ HLAQ+K I P+AIE ++VL F E T C+K  LHI  N   +  +D +    + M+LRK+F  +  +F  +HP++ +
Subjt:  CSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPEENL

Sequences

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CDS sequence

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ATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTACATGGGTGAGAGTGGCCAATACGCC
GACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTC
CATTAGGTCCCCCTGCTAGCTCAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCGTTGAAGTATTCAGAGTCGTCAAC
GGAGGTGTGAGTTTGGTGCATGAGCGATCCGCCTGGGGTAAGCCTCAATCCTCTGTTTTCTCCTCTGTTTTACGGCTCCCAAAGATTTCAGCTCTCTTCCTCCCTCTCCT
AGAAAATACCTCCTGCGCCGCCCCTCCCCTCTTTGCTCTCACAACGACGACGAATCCTCCATCACAGCAGCAAGTAGGTCGTATCGTGGAAGTTCGCCTCCCTGAGAAAC
CTTATGGTTCGAGTGCTTCTGTTTCTTCTCTTGTTCGTCTTTATTTGCATTTAAGAATGAGTTCCAGATTTGAGGAGAGCATTGTTCTCGCATTCGTCGGTTTCCAAGGA
CAACATCTTTCTGCTAAGGACAAAATGTCTTCTTCATGTTCAGAAATCGAAGGCTATGAGTGCAGGAGGTTTTCACATGGTCATTTGGCCCAATTGAAGTTTATTTTACC
TAAAGCAATAGAGCATAGGAAGGTCCTTGTCTTTGATGAGCAAACCAGTTGTTTGAAGCTAGATCTTCACATATCTTTCAATTTTGGTGTGCTAGATAATCAAGATAACC
TTGAATCAGCAAACCAGAATATGCAGTTGAGGAAGTTGTTTAGGGAACGGTTTTCAGAATTTATGAGTTCCCATCCAGAGGAAAATCTTGGATTTTCTTTATTTTGTTGG
TATGCTATCATAATCCTTTATGAATTTACTGTTAATCTTTCTACGGCTAAATATTATGTGTTTGCTTTTAAGTTGTTGTGCAAGAGTCTCCACAGGGTTTTTAATCTTTG
TGAGGTAAATTGCATGAAGAGGTCTGATGCTGCCACGTGTCGCGCAGGGGAAATCCAAGGGTCTCCATTTAAAATCAAACCCTGTTCCGAAGAAGAAGGCAAAGAAGAAG
AAGACGCCCGCAGAAAAGGAAGCCAAGAGGCTGAAGTTTCTGAAGTACTACAGAAGGTCATCGAGGACATTGCAGAAGAAGTAGTCGCTGAGGAAGAACCGAAAGATTCT
GAAAAAGAAAAAGATCTTGAGAAGATTATTGAAACAGAGCAGGACGAGAGTCAAGTACAGGTAGCAACGGATTTACAAGAGCGAGGTAATAATGAAACAGTAGTTCACGA
GGTTCTGGAAGTGATGGTGTGGGATCCGCTGCACCGCCGCCGTCGCAAACAAAAAGCAGGGCGGATTAAAAGGATTCGGGCTGACACTCCATCTCCTCCTTCAACTGAAT
CGGAAAAGGAAGAACCCGAAAATCAAGAAGAAACTGAGAAGGAAGCTGCAGAAATTGAAAAGAAGACTCATAAAGATAAGGGCAAAGGTATTGCAGGAGCTGAGGTTGAG
GCAGAAGTGGCAAGGCCAGAAGAACAGAGATTACCGAAAGCGATGATTAGAGCTAAAACGAATCATGAACCATGGCTGGGAGATGTTCTGTTCCAAGCCAGAGCCCGTAA
ACTCGCAGGTGGTACGCGAGTTTTATGCAAAGAGATGGCGACAGAAGTTGTTGACTGGAGTCCCGAAGCCATCAATTCGCTGTACAATTTCCAGGACTTCCCTCATGCTG
GTTATAATGAGATGACGACAGCGCCATCTAACGAGACGTTAAATGCTGCTGTTAGGGAAGTCGGAATAGAGGGAGCACAGTGGCGGTTATCAAAAATCGAGAAGAGAACT
TTCCAGGCTGCGTATCTGAAGAAGGAAGCAAACACTTGGATGGGGTTTATCAGGCAGAGGTTGCTTCCAACAACTCACGATTCCACAGTCTCTCAGGAACGAGTTCTTCT
GGTTTTTGCAATACTAAGGTCTCTTAGCATCAATGTAGGTAAAATTAACGCGGGTGAAATTTATGATTGTTGGCGTAAAAAGGTTGGGAAATTGTTCTTTCCAAATACAA
TTTCAATGCTCTGTAAAAAAGCAGGGGTTCTAGAGAGCGCAGAAGATGTGGTGCTTTTGGACAAGGGAATAATCGACACGCCTAACTTGGCTCGGCTGCAGCGTACACAG
GAAGCGCGTCAAGGAGGGCTAGTCTCAGAGCTTGGTTTGGCAGAACGCTCAGAATATATTGCCGAGCGACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAAGGAGCA
AAACTGCCACGTGCCTCGGGTAAAAATGGACGAGGGGTGGTATGTCACCAATGGATTAAGAAGAGCATCGGGTGCCTTGGGTAATATTGTCAAATGGCGATGTGATGAGT
CTATATGTTGTGAAAGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGACGCACAGTTCGAGGCCTTGGGTAATATGGTGCATGGTTGTTGCACGATTGCATTTGTT
AAGTATGTTACAATATGTATGTTGTTCACCTCGTATATAAGGCATGTTATTGTGATTGAAAAGCATGATGTTTGTGTTGTATGTTGTTATGAGATCATATCCAGACTTGG
TGATGAAGGGGAGGCGCATGAGGAAGGACCATATCTAGTTCGCGTTGTTTTCCCTTTCTACTTCCTTTGGATAGGATAG

mRNA sequence

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Protein sequence

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MRAGVSYAMSLHKTGPRNSKPLDVTPLTTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPLGPPASSVIAGKIKWWCSSLLQSNQESFVEVFRVVN
GGVSLVHERSAWGKPQSSVFSSVLRLPKISALFLPLLENTSCAAPPLFALTTTTNPPSQQQVGRIVEVRLPEKPYGSSASVSSLVRLYLHLRMSSRFEESIVLAFVGFQG
QHLSAKDKMSSSCSEIEGYECRRFSHGHLAQLKFILPKAIEHRKVLVFDEQTSCLKLDLHISFNFGVLDNQDNLESANQNMQLRKLFRERFSEFMSSHPEENLGFSLFCW
YAIIILYEFTVNLSTAKYYVFAFKLLCKSLHRVFNLCEVNCMKRSDAATCRAGEIQGSPFKIKPCSEEEGKEEEDARRKGSQEAEVSEVLQKVIEDIAEEVVAEEEPKDS
EKEKDLEKIIETEQDESQVQVATDLQERGNNETVVHEVLEVMVWDPLHRRRRKQKAGRIKRIRADTPSPPSTESEKEEPENQEETEKEAAEIEKKTHKDKGKGIAGAEVE
AEVARPEEQRLPKAMIRAKTNHEPWLGDVLFQARARKLAGGTRVLCKEMATEVVDWSPEAINSLYNFQDFPHAGYNEMTTAPSNETLNAAVREVGIEGAQWRLSKIEKRT
FQAAYLKKEANTWMGFIRQRLLPTTHDSTVSQERVLLVFAILRSLSINVGKINAGEIYDCWRKKVGKLFFPNTISMLCKKAGVLESAEDVVLLDKGIIDTPNLARLQRTQ
EARQGGLVSELGLAERSEYIAERLEGAKSALQQSKEQNCHVPRVKMDEGWYVTNGLRRASGALGNIVKWRCDESICCESHRVPWVIWPRGDAQFEALGNMVHGCCTIAFV
KYVTICMLFTSYIRHVIVIEKHDVCVVCCYEIISRLGDEGEAHEEGPYLVRVVFPFYFLWIG

Spg027208 (gene) of Sponge gourd (cylindrica) v1 genome