; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027232 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027232
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:8727775..8729930
RNA-Seq ExpressionSpg027232
SyntenySpg027232
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.0e-1940.35Show/hide
Query:  PPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDN
        P    E +SRAQ+YMS  E   SK+ E   KR+      S  DK Q +    R R  + D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   
Subjt:  PPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDN

Query:  RDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPM
        R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q     +    S    +RT    P+
Subjt:  RDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPM

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]8.3e-1832.64Show/hide
Query:  VRGLKHAERTVLMSPEPSTSRRTDLRNLIEEKRRSAKTAESEARA-------AEAEARAAEAEVEARLVEAEAQKDNLPWKTELLNALKKLGNPQGDLQK
        + G+  A R  + S   + S R   R L   KR S  + +S ARA           +R     +  +    E+ +D +    E    ++ L +    L  
Subjt:  VRGLKHAERTVLMSPEPSTSRRTDLRNLIEEKRRSAKTAESEARA-------AEAEARAAEAEVEARLVEAEAQKDNLPWKTELLNALKKLGNPQGDLQK

Query:  SRDLGDQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIR
           + D+ +     +  P    E +SRAQ+YMS  E   SK+ E + KR+      S  DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI+
Subjt:  SRDLGDQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIR

Query:  NTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPM
        +  LL  P ++K++   R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q     +    S    +RT    P+
Subjt:  NTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPM

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]1.5e-2239.43Show/hide
Query:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEEL------LKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEI
        D+ +     +  P    E +SRAQKYMS EE       L+ K+++++ +RS     +S+ +K+ R          + D  +KFE+YTPT++P EQ+LMEI
Subjt:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEEL------LKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEI

Query:  RNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWT
        ++  LL  P  +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A   R    +  T
Subjt:  RNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWT

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.2e-1937.77Show/hide
Query:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLL
        D+ +     +  P    E +SRAQ+YMS  E   SK+ E + KR+      S  DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL
Subjt:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLL

Query:  NVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPMAEVEA
          P ++K     R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q    ++    S    +RT    P+    A
Subjt:  NVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPMAEVEA

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]5.7e-1940.65Show/hide
Query:  EFVSRAQKYMSVEELLKSKKSERE------YKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPD
        E +SRAQKY +V+EL  +K+           KR    +    K+K  R ++ G           +F RYTP ++P+EQ+LM+IRN +LL  P+ +K  P+
Subjt:  EFVSRAQKYMSVEELLKSKKSERE------YKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPD

Query:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQ
         RD+S+YC +HRDH H+  +C  LK+EI++LI+ GYLKEF  K   D GR R  +
Subjt:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQ

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128059.5e-2040.35Show/hide
Query:  PPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDN
        P    E +SRAQ+YMS  E   SK+ E   KR+      S  DK Q +    R R  + D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   
Subjt:  PPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDN

Query:  RDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPM
        R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q     +    S    +RT    P+
Subjt:  RDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPM

A0A6J1DYL6 uncharacterized protein LOC1110257855.6e-2037.77Show/hide
Query:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLL
        D+ +     +  P    E +SRAQ+YMS  E   SK+ E + KR+      S  DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL
Subjt:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLL

Query:  NVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPMAEVEA
          P ++K     R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q    ++    S    +RT    P+    A
Subjt:  NVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWTSTGNSLRTKRDSPMAEVEA

A0A6J1DZ52 uncharacterized protein LOC1110256127.0e-2339.43Show/hide
Query:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEEL------LKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEI
        D+ +     +  P    E +SRAQKYMS EE       L+ K+++++ +RS     +S+ +K+ R          + D  +KFE+YTPT++P EQ+LMEI
Subjt:  DQDMEELLDQVDPPFTEEFVSRAQKYMSVEEL------LKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEI

Query:  RNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWT
        ++  LL  P  +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A   R    +  T
Subjt:  RNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGWT

A0A7N2N013 Ribonuclease H1.8e-1842.04Show/hide
Query:  DPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDR--GDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSN
        DP    E + RA KYM+ E+ L S++ +R  KR    D  SR+D+ ++    G  R DR       +F  +TP + P +Q+LM+I++   L  P KLKS+
Subjt:  DPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDR--GDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQ
        P  R + +YC FHRDHGH T +C  LK +IEALIR G L++F  K   DQ  P Q Q
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQ

A0A7N2N9G0 Reverse transcriptase2.3e-1840.67Show/hide
Query:  DPPFTEEFVSRAQKYMSVEELL---KSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKS
        DP    E + RA KYM+ E+ L   + K  +RE +  +  D   +K +     E  R RP  G    +F  +TP + P +Q+LM+I++   L  P KLKS
Subjt:  DPPFTEEFVSRAQKYMSVEELL---KSKKSEREYKRSSSSDHNSRKDKKQRTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKS

Query:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD
        +P+ R + +YC FHRDHGH T +C  LK +IEALIR G L+ F +K  AD
Subjt:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTAGCCGCCCCGGTTTCGCCTGGTTGGACCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCATTTGGCGCCGTCTATGGGGAAGAAAGCTTGCT
AAATCTGCACATCGGTCATTCAATGAGTAAGAGGATGGAAAAGGGAAACCGAAATCCAAGCCCAGAAACTTCAAAAAATAGCCGCCAGCCGCAGAGGTCACGTGACGATG
ATAGCGTCCAGGGGTCACCGAGACGAACAGGCCGAGGAGCCGAGGCCGAGGAGAATAGGCCGAGGGGCCGAGGCCGAGGAGAGGATTCTGACGCCAAAATTGCCGCCCTT
GAGGATAAGGTGAAGGGAATGAATCAGAGTTTGTCCAGAATACTCCAAATCCTGGACAAACCCGGCCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACCCAAA
GAAGGGGAAGGAGCCAATCGAGTACGTGGATGAATCAGAGACAGAATCGAAAGGAAAGAAGACCAACAGCGCAATCAGCAAGGTTAGGGGGCTGAAGCATGCAGAGCGCA
CAGTACTGATGAGCCCAGAACCAAGTACCAGCCGTCGAACAGACCTGAGAAATCTGATCGAGGAAAAGCGCAGGAGTGCCAAAACTGCCGAATCCGAGGCCAGAGCTGCC
GAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGTCGAGGCTAGGTTGGTCGAGGCCGAGGCCCAGAAGGATAATCTCCCTTGGAAGACTGAGCTTCTGAACGCACTAAAGAA
GCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAGGGACCTTGGAGACCAAGACATGGAAGAACTACTCGACCAAGTCGACCCACCTTTCACAGAAGAATTTGTCTCCC
GGGCCCAAAAATACATGAGCGTAGAGGAGTTGCTCAAGTCAAAGAAGTCAGAGCGTGAATACAAGAGGTCTTCTTCATCTGACCACAACAGTAGGAAGGATAAGAAGCAG
CGGACCGACGAGGGAGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAG
GAATACAAACTTACTCAACGTGCCTAGAAAGCTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACT
GCATTCAGCTAAAGGACGAGATTGAAGCACTGATTCGAAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCCGACCAGGGACGACCCAGGCAAAGACAAGGGTGG
ACCTCAACTGGAAATTCATTGAGGACCAAAAGAGACTCCCCTATGGCCGAGGTCGAGGCCGAGCCTTACCACACTTCATGCCAGGGTCAAGGACAGCATTCTGGAGAACA
CACTAAGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCTAGCCGCCCCGGTTTCGCCTGGTTGGACCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCATTTGGCGCCGTCTATGGGGAAGAAAGCTTGCT
AAATCTGCACATCGGTCATTCAATGAGTAAGAGGATGGAAAAGGGAAACCGAAATCCAAGCCCAGAAACTTCAAAAAATAGCCGCCAGCCGCAGAGGTCACGTGACGATG
ATAGCGTCCAGGGGTCACCGAGACGAACAGGCCGAGGAGCCGAGGCCGAGGAGAATAGGCCGAGGGGCCGAGGCCGAGGAGAGGATTCTGACGCCAAAATTGCCGCCCTT
GAGGATAAGGTGAAGGGAATGAATCAGAGTTTGTCCAGAATACTCCAAATCCTGGACAAACCCGGCCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACCCAAA
GAAGGGGAAGGAGCCAATCGAGTACGTGGATGAATCAGAGACAGAATCGAAAGGAAAGAAGACCAACAGCGCAATCAGCAAGGTTAGGGGGCTGAAGCATGCAGAGCGCA
CAGTACTGATGAGCCCAGAACCAAGTACCAGCCGTCGAACAGACCTGAGAAATCTGATCGAGGAAAAGCGCAGGAGTGCCAAAACTGCCGAATCCGAGGCCAGAGCTGCC
GAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGTCGAGGCTAGGTTGGTCGAGGCCGAGGCCCAGAAGGATAATCTCCCTTGGAAGACTGAGCTTCTGAACGCACTAAAGAA
GCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAGGGACCTTGGAGACCAAGACATGGAAGAACTACTCGACCAAGTCGACCCACCTTTCACAGAAGAATTTGTCTCCC
GGGCCCAAAAATACATGAGCGTAGAGGAGTTGCTCAAGTCAAAGAAGTCAGAGCGTGAATACAAGAGGTCTTCTTCATCTGACCACAACAGTAGGAAGGATAAGAAGCAG
CGGACCGACGAGGGAGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAG
GAATACAAACTTACTCAACGTGCCTAGAAAGCTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACT
GCATTCAGCTAAAGGACGAGATTGAAGCACTGATTCGAAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCCGACCAGGGACGACCCAGGCAAAGACAAGGGTGG
ACCTCAACTGGAAATTCATTGAGGACCAAAAGAGACTCCCCTATGGCCGAGGTCGAGGCCGAGCCTTACCACACTTCATGCCAGGGTCAAGGACAGCATTCTGGAGAACA
CACTAAGCCTTAG
Protein sequenceShow/hide protein sequence
MPLAAPVSPGWTRNASEFLKTLGARAFGAVYGEESLLNLHIGHSMSKRMEKGNRNPSPETSKNSRQPQRSRDDDSVQGSPRRTGRGAEAEENRPRGRGRGEDSDAKIAAL
EDKVKGMNQSLSRILQILDKPGPSTKLHEGGLIRDPKKGKEPIEYVDESETESKGKKTNSAISKVRGLKHAERTVLMSPEPSTSRRTDLRNLIEEKRRSAKTAESEARAA
EAEARAAEAEVEARLVEAEAQKDNLPWKTELLNALKKLGNPQGDLQKSRDLGDQDMEELLDQVDPPFTEEFVSRAQKYMSVEELLKSKKSEREYKRSSSSDHNSRKDKKQ
RTDEGGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQGRPRQRQGW
TSTGNSLRTKRDSPMAEVEAEPYHTSCQGQGQHSGEHTKP