; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027240 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027240
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold8:6824940..6829406
RNA-Seq ExpressionSpg027240
SyntenySpg027240
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005768 - endosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005509 - calcium ion binding (molecular function)
GO:0035091 - phosphatidylinositol binding (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3433118.1 hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis]1.0e-3275.23Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

KAG5153891.1 hypothetical protein JHK82_011860 [Glycine max]7.8e-3374.31Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D++ NICKFAKKGLT SQIGVIL DSHGIAQV SV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

MBA0719002.1 hypothetical protein [Gossypium laxum]6.0e-3371.3Show/hide
Query:  LTPIIEASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENR
        L  +I ++   + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+R
Subjt:  LTPIIEASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENR

Query:  IHRLARYYKKTKKLP
        IHRLARYYKKTKKLP
Subjt:  IHRLARYYKKTKKLP

XP_010053902.1 40S ribosomal protein S13 [Eucalyptus grandis]1.0e-3275.23Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

XP_039046441.1 40S ribosomal protein S13-like [Hibiscus syriacus]4.6e-3376.15Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D K NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

TrEMBL top hitse value%identityAlignment
A0A1S3UTL9 40S ribosomal protein S135.0e-3375.23Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

A0A1U8P375 40S ribosomal protein S13-like5.0e-3375.23Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

A0A2G9GA89 40S ribosomal protein S135.0e-3375.23Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

A0A6A2WP85 40S ribosomal protein S132.2e-3376.15Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D K NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

A0A7J9A571 Ribosomal_S13_N domain-containing protein2.9e-3371.3Show/hide
Query:  LTPIIEASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENR
        L  +I ++   + NICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+R
Subjt:  LTPIIEASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENR

Query:  IHRLARYYKKTKKLP
        IHRLARYYKKTKKLP
Subjt:  IHRLARYYKKTKKLP

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.5e-3474.31Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D    ICKFAKKGLT SQIGVIL DSHGIAQVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

P59223 40S ribosomal protein S13-17.4e-3476.47Show/hide
Query:  NICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARYYKKTKK
        +ICKFAKKGLT SQIGVIL DSHGI QVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLARYYKKTKK
Subjt:  NICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARYYKKTKK

Query:  LP
        LP
Subjt:  LP

P59224 40S ribosomal protein S13-24.3e-3474.07Show/hide
Query:  SFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARY
        S D   +ICKFAKKGLT SQIGVIL DSHGI QVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLARY
Subjt:  SFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARY

Query:  YKKTKKLP
        YKKTKKLP
Subjt:  YKKTKKLP

P62302 40S ribosomal protein S135.1e-3574.31Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        +S D + NICKFAKKGLT SQIGVIL DSHGIAQV SV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYKKTKKLP
Subjt:  YYKKTKKLP

Q69UI2 40S ribosomal protein S13-16.0e-2865.14Show/hide
Query:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR
        A+ D +  I K AKKG   SQIGV+L D HGI  VKSV  SKILRILKAHGLAPEIPEDLY LIK+ +   + + R   K +  KFRLILVE+RIHRLAR
Subjt:  ASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLAR

Query:  YYKKTKKLP
        YYK+TKKLP
Subjt:  YYKKTKKLP

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S155.2e-3576.47Show/hide
Query:  NICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARYYKKTKK
        +ICKFAKKGLT SQIGVIL DSHGI QVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLARYYKKTKK
Subjt:  NICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARYYKKTKK

Query:  LP
        LP
Subjt:  LP

AT4G00100.1 ribosomal protein S13A3.1e-3574.07Show/hide
Query:  SFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARY
        S D   +ICKFAKKGLT SQIGVIL DSHGI QVKSV  SKILRILKAHGLAPEIPEDLYHLIK+ +   + + R   K +  KFRLILVE+RIHRLARY
Subjt:  SFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSVPRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARY

Query:  YKKTKKLP
        YKKTKKLP
Subjt:  YKKTKKLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTTCCCCACAACCCCTCATTTTTCTCCCTCCAACCGCAAACCTCCGATGAACCAGCTTCGTGTGGCGATGATAGTCACCTTCTCCATGGTGGCGTGAAGCGTGT
TCAAGCAGCGGATTCATATTTGCCCATTATTAATACGACCAATGCTCTTGTTGCAAAGCTTATGGACTGGGTGGGCAATCTCCCAGAGTTGACTCCCATCATTGAAGCAT
CATTTGATAATAAAATGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTAATTCTTTGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTA
CCTAGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCGGAAGATCTTTACCATCTCATCAAGAGGAAGCTGTTTCAATCAGAAAGCATTTG
GAGAGAAACAGGAAAGACAAGGATTCCAAAGTTCAGGTTGATTTTGGTGGAGAACAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCTCTATTTA
GAAGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTTCCCCACAACCCCTCATTTTTCTCCCTCCAACCGCAAACCTCCGATGAACCAGCTTCGTGTGGCGATGATAGTCACCTTCTCCATGGTGGCGTGAAGCGTGT
TCAAGCAGCGGATTCATATTTGCCCATTATTAATACGACCAATGCTCTTGTTGCAAAGCTTATGGACTGGGTGGGCAATCTCCCAGAGTTGACTCCCATCATTGAAGCAT
CATTTGATAATAAAATGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTAATTCTTTGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTA
CCTAGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCGGAAGATCTTTACCATCTCATCAAGAGGAAGCTGTTTCAATCAGAAAGCATTTG
GAGAGAAACAGGAAAGACAAGGATTCCAAAGTTCAGGTTGATTTTGGTGGAGAACAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCTCTATTTA
GAAGTAGTTAG
Protein sequenceShow/hide protein sequence
MSFPHNPSFFSLQPQTSDEPASCGDDSHLLHGGVKRVQAADSYLPIINTTNALVAKLMDWVGNLPELTPIIEASFDNKMNICKFAKKGLTSSQIGVILCDSHGIAQVKSV
PRSKILRILKAHGLAPEIPEDLYHLIKRKLFQSESIWRETGKTRIPKFRLILVENRIHRLARYYKKTKKLPLFRSS