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Spg027245 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027245
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold8:3380103..3388067
RNA-Seq ExpressionSpg027245
SyntenySpg027245
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.7e-0441.33Show/hide
Query:  EPLSVKLKDNNFLLWKNQLLNAVIT----------IPAPSKFLTAQQLQLNPEFLHWE-------SFTHPSVAPA
        +PL++KL + N  LWKNQLLN +I            P P+KFL   QLQ+NP F+ WE       S+ + S+ PA
Subjt:  EPLSVKLKDNNFLLWKNQLLNAVIT----------IPAPSKFLTAQQLQLNPEFLHWE-------SFTHPSVAPA

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]3.1e-0655Show/hide
Query:  EPLSVKLKDNNFLLWKNQLLNAVI----------TIPAPSKFLTAQQLQLNPEFLHWESF
        +PL+VKL DNNFLLWKNQLLNAVI          TI  P +FL   QLQ NP +  WE +
Subjt:  EPLSVKLKDNNFLLWKNQLLNAVI----------TIPAPSKFLTAQQLQLNPEFLHWESF

XP_024030419.1 uncharacterized protein LOC21412525 isoform X1 [Morus notabilis]2.2e-0439.71Show/hide
Query:  LSVKLKDNNFLLWKNQLLNAVIT----------IPAPSKFLTAQQLQLNPEFLHWESFTHPSVAPAHH
        LS+KL D+NFLLWKNQ+LN++I            P P +FL  Q  ++NP++  W+    PS+   H+
Subjt:  LSVKLKDNNFLLWKNQLLNAVIT----------IPAPSKFLTAQQLQLNPEFLHWESFTHPSVAPAHH

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE18.1e-0541.33Show/hide
Query:  EPLSVKLKDNNFLLWKNQLLNAVIT----------IPAPSKFLTAQQLQLNPEFLHWE-------SFTHPSVAPA
        +PL++KL + N  LWKNQLLN +I            P P+KFL   QLQ+NP F+ WE       S+ + S+ PA
Subjt:  EPLSVKLKDNNFLLWKNQLLNAVIT----------IPAPSKFLTAQQLQLNPEFLHWE-------SFTHPSVAPA

A0A6J1DQX7 uncharacterized protein LOC1110223151.5e-0655Show/hide
Query:  EPLSVKLKDNNFLLWKNQLLNAVI----------TIPAPSKFLTAQQLQLNPEFLHWESF
        +PL+VKL DNNFLLWKNQLLNAVI          TI  P +FL   QLQ NP +  WE +
Subjt:  EPLSVKLKDNNFLLWKNQLLNAVI----------TIPAPSKFLTAQQLQLNPEFLHWESF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGAACCATGGCGACCCCAAAAATTAGTGCCAAGAAGTCAAAAAGTCAAGCTCCAAGTCAAGAAACCCAAGGGCATAGCGTTGGGACGCTGCCACAATAGCATCTC
AACGCTAATCAAGCAAGCAACACGCTGGGAAGCTCGTAGCGTCGAGAAGCTGGCCTTAGCGACTCGACACTACCTTGATGGATTGCAAAAACACTCAGATAGAGGCCTGA
GTGTCGAGCCACTCTCTGTGAAGCTCAAGGACAACAACTTCCTTCTTTGGAAGAATCAACTCTTGAACGCGGTTATTACGATTCCTGCCCCTTCTAAATTCCTTACTGCT
CAGCAACTTCAACTAAATCCAGAATTTCTCCATTGGGAAAGTTTTACTCATCCATCTGTGGCTCCTGCTCATCACCATTCCCCATTACCTCTTCAGCATCCTGATCCCTC
TACATCTTCACCTCAAGTTACTTCATCGACCTCCTCATTGCCATCTTCTGATTCATCGTCTGCTTCTGTTGCAAACGTTTTACACTTAGTTGGAGATTGTGATTTGTGGG
TGAGTGAAAGAGTGGAAGTGGCTCAGAGCCAGAGCTTTTTGGGGCATTTGGTTAGTAGCAGGCAGCAGCACAGAAAGCTTGGCCACAATCCAAGAGATGGTGGGGGCATT
TTGGGGAACTTGGGTATTGGATATTGTCAAGAAGCACGATTTTGGAGGTTTAGTCTGGAAGGGAAGCTCAACACCACTCGTAGAGCCAATGCCAAAAAGAGCTTCTTCGT
ATTTGGCAGAATTAGGCTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGAACCATGGCGACCCCAAAAATTAGTGCCAAGAAGTCAAAAAGTCAAGCTCCAAGTCAAGAAACCCAAGGGCATAGCGTTGGGACGCTGCCACAATAGCATCTC
AACGCTAATCAAGCAAGCAACACGCTGGGAAGCTCGTAGCGTCGAGAAGCTGGCCTTAGCGACTCGACACTACCTTGATGGATTGCAAAAACACTCAGATAGAGGCCTGA
GTGTCGAGCCACTCTCTGTGAAGCTCAAGGACAACAACTTCCTTCTTTGGAAGAATCAACTCTTGAACGCGGTTATTACGATTCCTGCCCCTTCTAAATTCCTTACTGCT
CAGCAACTTCAACTAAATCCAGAATTTCTCCATTGGGAAAGTTTTACTCATCCATCTGTGGCTCCTGCTCATCACCATTCCCCATTACCTCTTCAGCATCCTGATCCCTC
TACATCTTCACCTCAAGTTACTTCATCGACCTCCTCATTGCCATCTTCTGATTCATCGTCTGCTTCTGTTGCAAACGTTTTACACTTAGTTGGAGATTGTGATTTGTGGG
TGAGTGAAAGAGTGGAAGTGGCTCAGAGCCAGAGCTTTTTGGGGCATTTGGTTAGTAGCAGGCAGCAGCACAGAAAGCTTGGCCACAATCCAAGAGATGGTGGGGGCATT
TTGGGGAACTTGGGTATTGGATATTGTCAAGAAGCACGATTTTGGAGGTTTAGTCTGGAAGGGAAGCTCAACACCACTCGTAGAGCCAATGCCAAAAAGAGCTTCTTCGT
ATTTGGCAGAATTAGGCTGTTTTGA
Protein sequenceShow/hide protein sequence
MSEPWRPQKLVPRSQKVKLQVKKPKGIALGRCHNSISTLIKQATRWEARSVEKLALATRHYLDGLQKHSDRGLSVEPLSVKLKDNNFLLWKNQLLNAVITIPAPSKFLTA
QQLQLNPEFLHWESFTHPSVAPAHHHSPLPLQHPDPSTSSPQVTSSTSSLPSSDSSSASVANVLHLVGDCDLWVSERVEVAQSQSFLGHLVSSRQQHRKLGHNPRDGGGI
LGNLGIGYCQEARFWRFSLEGKLNTTRRANAKKSFFVFGRIRLF