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Spg027254 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027254
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold8:9055590..9060502
RNA-Seq ExpressionSpg027254
SyntenySpg027254
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-2158.97Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK
        RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGD--PCLASRR
          GGPGG   P   SRR
Subjt:  LAGGPGGD--PCLASRR

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-2251.32Show/hide
Query:  LFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSSTW------------------
        LFGL Y EG KR            PRGNR+SLQTGELDKT                 VEI+LPVPDTLPTSAESS S+SSTW                  
Subjt:  LFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSSTW------------------

Query:  ---------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR
                 F+VSVGST IVRGD+VCWLHAVF AK AGGPGG   P   SRR
Subjt:  ---------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.0e-2450.62Show/hide
Query:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK-RAQDFRAKQE---------DLWPRGNRSSLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWF----
        K +AKPAIA S  N      LFGLSY E ++  +  F +K            + PRGNR +L TG+LDKTVEI+LPVPDTLPTSAESS+S+SSTW     
Subjt:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK-RAQDFRAKQE---------DLWPRGNRSSLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWF----

Query:  -SVSV-------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR
         SV V                   GS GIVRGDD+CWLHAVF AK AG PGG   P   SRR
Subjt:  -SVSV-------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]6.8e-2147.83Show/hide
Query:  LFGLSYTEGIKRAQDFRAKQED---------------------LWPRGNRSSLQTGELDKTV---------------EIKLPVPDTLPTSAESSRSSSST
        LF LSY EG K +  F +K                        L PRGNR SLQTGELDKTV                I+LPVPDTLPTSAESS S+SST
Subjt:  LFGLSYTEGIKRAQDFRAKQED---------------------LWPRGNRSSLQTGELDKTV---------------EIKLPVPDTLPTSAESSRSSSST

Query:  W---------------------------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        W                           F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  W---------------------------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-2158.97Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK
        RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGD--PCLASRR
          GGPGG   P   SRR
Subjt:  LAGGPGGD--PCLASRR

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.5e-2158.97Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK
        RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGD--PCLASRR
          GGPGG   P   SRR
Subjt:  LAGGPGGD--PCLASRR

A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.8e-2351.32Show/hide
Query:  LFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSSTW------------------
        LFGL Y EG KR            PRGNR+SLQTGELDKT                 VEI+LPVPDTLPTSAESS S+SSTW                  
Subjt:  LFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSSTW------------------

Query:  ---------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR
                 F+VSVGST IVRGD+VCWLHAVF AK AGGPGG   P   SRR
Subjt:  ---------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR

A0A5A7UAH6 CCHC-type domain-containing protein4.9e-2550.62Show/hide
Query:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK-RAQDFRAKQE---------DLWPRGNRSSLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWF----
        K +AKPAIA S  N      LFGLSY E ++  +  F +K            + PRGNR +L TG+LDKTVEI+LPVPDTLPTSAESS+S+SSTW     
Subjt:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK-RAQDFRAKQE---------DLWPRGNRSSLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWF----

Query:  -SVSV-------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR
         SV V                   GS GIVRGDD+CWLHAVF AK AG PGG   P   SRR
Subjt:  -SVSV-------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR

A0A5D3CJX3 CCHC-type domain-containing protein3.3e-2147.83Show/hide
Query:  LFGLSYTEGIKRAQDFRAKQED---------------------LWPRGNRSSLQTGELDKTV---------------EIKLPVPDTLPTSAESSRSSSST
        LF LSY EG K +  F +K                        L PRGNR SLQTGELDKTV                I+LPVPDTLPTSAESS S+SST
Subjt:  LFGLSYTEGIKRAQDFRAKQED---------------------LWPRGNRSSLQTGELDKTV---------------EIKLPVPDTLPTSAESSRSSSST

Query:  W---------------------------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        W                           F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  W---------------------------FSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3D150 Reverse transcriptase1.5e-2158.97Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK
        RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSRSSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGD--PCLASRR
          GGPGG   P   SRR
Subjt:  LAGGPGGD--PCLASRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCTAGTAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCAAAGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGGTC
TCAATCTCACTCATCTCCATATATCTCTCTAGTGCTTGAACCTTCAAGCATTCCCTTCCCATTCCCTATCTCTATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAG
TAGGGAAGACACTAGAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATC
AAGAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCAAGCTCCCGGT
GCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGC
TTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAAT
ATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAAAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCT
GCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAATGCAAACTCCAGAAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCT
CTTCCTTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCTAGTAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCAAAGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGGTC
TCAATCTCACTCATCTCCATATATCTCTCTAGTGCTTGAACCTTCAAGCATTCCCTTCCCATTCCCTATCTCTATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAG
TAGGGAAGACACTAGAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATC
AAGAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCAAGCTCCCGGT
GCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGC
TTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAAT
ATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAAAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCT
GCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAATGCAAACTCCAGAAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCT
CTTCCTTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATAA
Protein sequenceShow/hide protein sequence
MCLVGFSLHGRCLYKEYESDSKKESHFPYCYAAGFWSQSHSSPYISLVLEPSSIPFPFPISIDSHKSFLARRIVGKTLEGKAHAKPAIAGSEINLSTSGFLFGLSYTEGI
KRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDPCLASRRPGSVPLRMVFAWVN
IKVNGESVHSKWEKETCQTYPAVSIIRLHREIPMRCLRVALGAITLRRACAWDSEQCKLQKWIGFPRAIPNISSSLRWHCWGRPLRSENDG