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Spg027263 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027263
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:2629688..2631423
RNA-Seq ExpressionSpg027263
SyntenySpg027263
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.2e-1259.76Show/hide
Query:  TVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPRGNRSSLQTGELEKTVEIELPVPDTLPTSVESFRSSSSTWLELYIES
        TVN W F+ F L          Y    K     RPRGNR SLQTG+L+KTVEIELP+PDTLPT  ESF S+SSTWLELY ES
Subjt:  TVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPRGNRSSLQTGELEKTVEIELPVPDTLPTSVESFRSSSSTWLELYIES

KAA0040575.1 putative integrase [Cucumis melo var. makuwa]6.5e-1448.51Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLF--------------------FRPRGNRSSL
        +HFEERVK EEEEEFRGLRLKKIGKSSC ASHCRIWVQ      F+ F       E   V+K NQKL L                     +  RGNR SL
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLF--------------------FRPRGNRSSL

Query:  QTGELEKT-----------------VEIELPVPD
        Q GEL+KT                 VEIEL VPD
Subjt:  QTGELEKT-----------------VEIELPVPD

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.1e-2648.85Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPR
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF +    +                    RPR
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPR

Query:  GNRSSLQTGELEKT----------------------------VEIELPVPDTLPTSVESFRSSSSTWLELYIES
        GNR SLQTG+L+KT                            VEIELP+PDTLPT  ESF S+SSTWLELY ES
Subjt:  GNRSSLQTGELEKT----------------------------VEIELPVPDTLPTSVESFRSSSSTWLELYIES

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.4e-1949.08Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFR--
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S+  +S             F+ F      QE   V+K NQKLYL     
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFR--

Query:  --------PRGNRSSLQTGELEKT-----------------VEIELPVPDTLPTSVESFRSSS
                PRGNRSSLQTGEL+KT                 VEIELPVPD LPTS +S  S+S
Subjt:  --------PRGNRSSLQTGELEKT-----------------VEIELPVPDTLPTSVESFRSSS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.4e-2441.05Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLFFR-------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +  F  +   F +         V K NQKLY           
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLFFR-------

Query:  ---PRGNRSSLQTGELEK-------------------------------------------------------------------------------TVE
           PRGNRSSLQTG+L+K                                                                               ++E
Subjt:  ---PRGNRSSLQTGELEK-------------------------------------------------------------------------------TVE

Query:  IELPVPDTLPTSVESFRSSSSTWLELYIE
        IEL VPDTLPTS ES  S+SSTWLE   E
Subjt:  IELPVPDTLPTSVESFRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein6.0e-1359.76Show/hide
Query:  TVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPRGNRSSLQTGELEKTVEIELPVPDTLPTSVESFRSSSSTWLELYIES
        TVN W F+ F L          Y    K     RPRGNR SLQTG+L+KTVEIELP+PDTLPT  ESF S+SSTWLELY ES
Subjt:  TVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPRGNRSSLQTGELEKTVEIELPVPDTLPTSVESFRSSSSTWLELYIES

A0A5A7TGM2 Putative integrase3.2e-1448.51Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLF--------------------FRPRGNRSSL
        +HFEERVK EEEEEFRGLRLKKIGKSSC ASHCRIWVQ      F+ F       E   V+K NQKL L                     +  RGNR SL
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLF--------------------FRPRGNRSSL

Query:  QTGELEKT-----------------VEIELPVPD
        Q GEL+KT                 VEIEL VPD
Subjt:  QTGELEKT-----------------VEIELPVPD

A0A5A7UGD0 Uncharacterized protein5.6e-2748.85Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPR
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF +    +                    RPR
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPR

Query:  GNRSSLQTGELEKT----------------------------VEIELPVPDTLPTSVESFRSSSSTWLELYIES
        GNR SLQTG+L+KT                            VEIELP+PDTLPT  ESF S+SSTWLELY ES
Subjt:  GNRSSLQTGELEKT----------------------------VEIELPVPDTLPTSVESFRSSSSTWLELYIES

A0A5D3BZ50 Pentatricopeptide repeat-containing protein6.6e-2049.08Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFR--
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S+  +S             F+ F      QE   V+K NQKLYL     
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFR--

Query:  --------PRGNRSSLQTGELEKT-----------------VEIELPVPDTLPTSVESFRSSS
                PRGNRSSLQTGEL+KT                 VEIELPVPD LPTS +S  S+S
Subjt:  --------PRGNRSSLQTGELEKT-----------------VEIELPVPDTLPTSVESFRSSS

A0A5D3CAC6 Uncharacterized protein6.8e-2541.05Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLFFR-------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +  F  +   F +         V K NQKLY           
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLFFR-------

Query:  ---PRGNRSSLQTGELEK-------------------------------------------------------------------------------TVE
           PRGNRSSLQTG+L+K                                                                               ++E
Subjt:  ---PRGNRSSLQTGELEK-------------------------------------------------------------------------------TVE

Query:  IELPVPDTLPTSVESFRSSSSTWLELYIE
        IEL VPDTLPTS ES  S+SSTWLE   E
Subjt:  IELPVPDTLPTSVESFRSSSSTWLELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGTAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGTTTTTCAGGCCACGAGGAAATAGGTCGAGTCTACAA
ACCGGAGAACTAGAAAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATAT
TGAGTCC
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGTAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGTTTTTCAGGCCACGAGGAAATAGGTCGAGTCTACAA
ACCGGAGAACTAGAAAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATAT
TGAGTCC
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLFFRPRGNRSSLQ
TGELEKTVEIELPVPDTLPTSVESFRSSSSTWLELYIES