; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027268 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027268
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold8:5616280..5618534
RNA-Seq ExpressionSpg027268
SyntenySpg027268
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]2.7e-4057.55Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+P S  E++V+ G  +F+V ++  SCSC FWD+EEIPCAHA  V+R LNL  YAFVS YY+++ L +TY G V P GNH DWS V V+ N+LPP+ +R 
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI
        AGRPRK+RI SIGE    +KCSRC R  HN RTC+F PI
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]1.2e-4058.27Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+P S  E++V+ G  +F+V ++  SCSC FWD+EEIPCAHA  V+R LNL  YAFVS YY+++ L +TY G V P GNH DWS V V+ N+LPP+ +R 
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI
        AGRPRK+RI SIGE    +KCSRC R GHN RTC+F PI
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]8.5e-5572.34Show/hide
Query:  KVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKR
        KVDP +NEEYKVI GDNHF+VN+  +SCSC+ WD+ EIPCAHACAV+ GLNL  Y FV DYYF S LLSTYKGSV P GNH DW S++V VN+LPPIVKR
Subjt:  KVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKR

Query:  QAGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPII
          GRPRKQRILSIGE +  +KCSRCHR GHN RTCKFPP++
Subjt:  QAGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPII

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]2.3e-4776.42Show/hide
Query:  KVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKR
        KVD  +NEEYKV+ GDNH+VVNV S+SCSC FWD+EEIPCAHACAVL  LNL SYAFVSDYYFS+   STYK S+ P GNH DWSSV+VD N+LPPIVKR
Subjt:  KVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKR

Query:  QAGRPRKQRILSIGEARSHTKCS
        Q GRPRKQRILS+GE RSH KCS
Subjt:  QAGRPRKQRILSIGEARSHTKCS

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]2.4e-1248.94Show/hide
Query:  LRTSRYKRSELWMLRKYVDSHICSTNSV-----QSSSSLIGDCLRNEFRFSSFNSSTPKDIVSKVDP---TSNEEYKVIGGDNHFVVNVDSRSC
        +R SRYK S+LWMLRK++D H CS N+V     Q+S+SLIGDCL+NEFR SS +S TPKDIV+KV      +   YK      H + ++   +C
Subjt:  LRTSRYKRSELWMLRKYVDSHICSTNSV-----QSSSSLIGDCLRNEFRFSSFNSSTPKDIVSKVDP---TSNEEYKVIGGDNHFVVNVDSRSC

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]2.6e-4356.03Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+  ++ E++VI G   F+V +D +SC+C+ WD+++IPCAHA AVLRG ++ +Y+FVS Y+ SS L+STY GSV P GNH +W S+ ++ N+LPP  KR+
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPIIQ
        AG+ +KQRILSIGE +SH++CS CHR GHNRR CKFPP +Q
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPIIQ

TrEMBL top hitse value%identityAlignment
A0A1S3CSI6 uncharacterized protein LOC1035044071.2e-4356.03Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+  ++ E++VI G   F+V +D +SC+C+ WD+++IPCAHA AVLRG ++ +Y+FVS Y+ SS L+STY GSV P GNH +W S+ ++ N+LPP  KR+
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPIIQ
        AG+ +KQRILSIGE +SH++CS CHR GHNRR CKFPP +Q
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPIIQ

A0A5A7SST5 MuDRA-like transposase3.8e-4056.83Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+P S  E++V+ G  +F+V ++  SCSC FWD++EIPCAHA  V+  LNL  YAFV  YY+++ L +TY G V P GNH DWS V V+ N+LPP+ +R 
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI
        AGRPRK+RI SIGE   + KCSRC RVGHN RTC+F PI
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI

A0A5A7SVB1 ZnF_PMZ domain-containing protein2.2e-4054.97Show/hide
Query:  STPK---DIVSKVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNV
        S PK   D+   V+P S  E++V+ G  +F+V ++  SCSC FWD+EEIPCA+A  V+R LNL  YAFVS YY+++ L +TY G V P  NH DWS V V
Subjt:  STPK---DIVSKVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNV

Query:  DVNLLPPIVKRQAGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI
        + N+LPP+ +R AGRPRK+RI SIGE    +KCSRC R GHN RTC F PI
Subjt:  DVNLLPPIVKRQAGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI

A0A5D3BD68 SWIM-type domain-containing protein1.3e-4057.55Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+P S  E++V+ G  +F+V ++  SCSC FWD+EEIPCAHA  V+R LNL  YAFVS YY+++ L +TY G V P GNH DWS V V+ N+LPP+ +R 
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI
        AGRPRK+RI SIGE    +KCSRC R  HN RTC+F PI
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI

A0A5D3BVP4 SWIM-type domain-containing protein5.8e-4158.27Show/hide
Query:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ
        V+P S  E++V+ G  +F+V ++  SCSC FWD+EEIPCAHA  V+R LNL  YAFVS YY+++ L +TY G V P GNH DWS V V+ N+LPP+ +R 
Subjt:  VDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQ

Query:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI
        AGRPRK+RI SIGE    +KCSRC R GHN RTC+F PI
Subjt:  AGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATTTTACGCTCCGGTTTCGCTCGTTTTAGCCTCGAATTGCTTCCAAAGCTCCGGACATCTCGCTATAAGAGAAGTGAATTGTGGATGCTTAGGAAATATGTAGA
TAGTCACATTTGTTCTACGAATAGTGTTCAGAGTTCTTCATCCCTCATTGGTGATTGTTTGAGAAATGAATTTCGTTTTAGTTCTTTTAATAGTTCAACTCCAAAGGATA
TTGTGAGTAAAGTTGATCCAACTAGCAATGAAGAATATAAAGTAATTGGTGGAGATAATCATTTTGTGGTAAACGTGGATTCTAGATCATGCAGTTGTCAGTTTTGGGAT
GTTGAGGAAATTCCATGTGCTCATGCATGTGCAGTTCTTCGTGGACTTAATTTGGTTTCTTATGCTTTTGTGTCTGACTATTATTTTTCAAGTAGATTGCTATCTACTTA
TAAAGGTTCAGTCTGTCCAGCGGGCAATCATTTGGATTGGAGCTCTGTAAATGTTGATGTGAATTTATTACCTCCAATTGTCAAACGTCAAGCAGGAAGGCCTCGAAAAC
AGAGGATTCTTTCAATTGGTGAAGCAAGAAGTCACACAAAATGTAGTCGTTGTCATCGCGTTGGTCATAATCGTAGGACATGTAAATTTCCGCCAATTATACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCATTTTACGCTCCGGTTTCGCTCGTTTTAGCCTCGAATTGCTTCCAAAGCTCCGGACATCTCGCTATAAGAGAAGTGAATTGTGGATGCTTAGGAAATATGTAGA
TAGTCACATTTGTTCTACGAATAGTGTTCAGAGTTCTTCATCCCTCATTGGTGATTGTTTGAGAAATGAATTTCGTTTTAGTTCTTTTAATAGTTCAACTCCAAAGGATA
TTGTGAGTAAAGTTGATCCAACTAGCAATGAAGAATATAAAGTAATTGGTGGAGATAATCATTTTGTGGTAAACGTGGATTCTAGATCATGCAGTTGTCAGTTTTGGGAT
GTTGAGGAAATTCCATGTGCTCATGCATGTGCAGTTCTTCGTGGACTTAATTTGGTTTCTTATGCTTTTGTGTCTGACTATTATTTTTCAAGTAGATTGCTATCTACTTA
TAAAGGTTCAGTCTGTCCAGCGGGCAATCATTTGGATTGGAGCTCTGTAAATGTTGATGTGAATTTATTACCTCCAATTGTCAAACGTCAAGCAGGAAGGCCTCGAAAAC
AGAGGATTCTTTCAATTGGTGAAGCAAGAAGTCACACAAAATGTAGTCGTTGTCATCGCGTTGGTCATAATCGTAGGACATGTAAATTTCCGCCAATTATACAATGA
Protein sequenceShow/hide protein sequence
MVILRSGFARFSLELLPKLRTSRYKRSELWMLRKYVDSHICSTNSVQSSSSLIGDCLRNEFRFSSFNSSTPKDIVSKVDPTSNEEYKVIGGDNHFVVNVDSRSCSCQFWD
VEEIPCAHACAVLRGLNLVSYAFVSDYYFSSRLLSTYKGSVCPAGNHLDWSSVNVDVNLLPPIVKRQAGRPRKQRILSIGEARSHTKCSRCHRVGHNRRTCKFPPIIQ