; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027281 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027281
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold8:3847041..3850214
RNA-Seq ExpressionSpg027281
SyntenySpg027281
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144014.1 uncharacterized protein LOC111013803 [Momordica charantia]1.7e-2065Show/hide
Query:  YHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPL
        Y  +S I AYA+PI P+GH S W  SP+FV++ V PP+ VPRVGRR+T RI STGEVR  RKCSRCG  GHNRKTC +PL
Subjt:  YHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPL

XP_022145141.1 uncharacterized protein LOC111014656 [Momordica charantia]8.9e-2251.67Show/hide
Query:  TLREFPSRLPLDFHQSPASRSLRV-----------IPVVYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVR
        T REF      D+ + P S ++ V               Y V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRRQT+RI STGEVR  R
Subjt:  TLREFPSRLPLDFHQSPASRSLRV-----------IPVVYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVR

Query:  KCSRCGNRGHNRKTCRQPLN
        KCSRCG  GHNRKTCR+PLN
Subjt:  KCSRCGNRGHNRKTCRQPLN

XP_022154922.1 uncharacterized protein LOC111022067 [Momordica charantia]9.8e-2153.51Show/hide
Query:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG
        T REF        H   A+ S  + P       Y V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRRQT+RI STGEVR   KCSRCG
Subjt:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG

Query:  NRGHNRKTCRQPLN
          GHNRKTCR+PLN
Subjt:  NRGHNRKTCRQPLN

XP_022156122.1 uncharacterized protein LOC111023087 [Momordica charantia]4.4e-2164.63Show/hide
Query:  VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPLN
        VY V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRRQT++I STGEVR  R CSRCG  GHNRKTCR+PLN
Subjt:  VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPLN

XP_022158655.1 uncharacterized protein LOC111025117 [Momordica charantia]7.5e-2152.63Show/hide
Query:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG
        T REF     L  H   A+ S  + P       Y V+S + A+A+PI  +G  + WK SP FV+++V PP++V RVGRRQT+RI STGEVR  RKCSRCG
Subjt:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG

Query:  NRGHNRKTCRQPLN
          GHNRKTCR+PLN
Subjt:  NRGHNRKTCRQPLN

TrEMBL top hitse value%identityAlignment
A0A6J1CR19 uncharacterized protein LOC1110138038.1e-2165Show/hide
Query:  YHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPL
        Y  +S I AYA+PI P+GH S W  SP+FV++ V PP+ VPRVGRR+T RI STGEVR  RKCSRCG  GHNRKTC +PL
Subjt:  YHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPL

A0A6J1CVG8 uncharacterized protein LOC1110146564.3e-2251.67Show/hide
Query:  TLREFPSRLPLDFHQSPASRSLRV-----------IPVVYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVR
        T REF      D+ + P S ++ V               Y V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRRQT+RI STGEVR  R
Subjt:  TLREFPSRLPLDFHQSPASRSLRV-----------IPVVYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVR

Query:  KCSRCGNRGHNRKTCRQPLN
        KCSRCG  GHNRKTCR+PLN
Subjt:  KCSRCGNRGHNRKTCRQPLN

A0A6J1DN02 uncharacterized protein LOC1110220674.8e-2153.51Show/hide
Query:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG
        T REF        H   A+ S  + P       Y V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRRQT+RI STGEVR   KCSRCG
Subjt:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG

Query:  NRGHNRKTCRQPLN
          GHNRKTCR+PLN
Subjt:  NRGHNRKTCRQPLN

A0A6J1DR67 uncharacterized protein LOC1110230872.1e-2164.63Show/hide
Query:  VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPLN
        VY V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRRQT++I STGEVR  R CSRCG  GHNRKTCR+PLN
Subjt:  VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPLN

A0A6J1DWF8 uncharacterized protein LOC1110251173.6e-2152.63Show/hide
Query:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG
        T REF     L  H   A+ S  + P       Y V+S + A+A+PI  +G  + WK SP FV+++V PP++V RVGRRQT+RI STGEVR  RKCSRCG
Subjt:  TLREFPSRLPLDFHQSPASRSLRVIPV-----VYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPRRVPRVGRRQTLRISSTGEVRHVRKCSRCG

Query:  NRGHNRKTCRQPLN
          GHNRKTCR+PLN
Subjt:  NRGHNRKTCRQPLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAATAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGATGAATCCCAAAATATTCCTGTGTATAA
CTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATATAGAGATTTTGAGGAGTACGGAGATGATGAGGACATAGACACAGAGGTTG
ATGTAGCTGTGGGAGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGCGCCTGAACAATATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTA
TGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGACCCCTGGGGTGGGGTGA
AAGGAATCCCATTCATTCTCCTACTCTCAGAGAATTTCCCTCAAGGCTTCCTTTGGACTTCCACCAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTAGTCTACC
ATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACGACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTTGTCGATGTGGAAGTCTTGCCTCCTCGA
AGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTACGGGAGAAGTGCGGCATGTTCGGAAATGCAGCCGGTGCGGGAATAGAGGTCATAACAGAAAAAC
ATGCAGACAACCATTGAATAATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAATAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGATGAATCCCAAAATATTCCTGTGTATAA
CTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATATAGAGATTTTGAGGAGTACGGAGATGATGAGGACATAGACACAGAGGTTG
ATGTAGCTGTGGGAGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGCGCCTGAACAATATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTA
TGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGACCCCTGGGGTGGGGTGA
AAGGAATCCCATTCATTCTCCTACTCTCAGAGAATTTCCCTCAAGGCTTCCTTTGGACTTCCACCAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTAGTCTACC
ATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACGACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTTGTCGATGTGGAAGTCTTGCCTCCTCGA
AGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTACGGGAGAAGTGCGGCATGTTCGGAAATGCAGCCGGTGCGGGAATAGAGGTCATAACAGAAAAAC
ATGCAGACAACCATTGAATAATTCTTGA
Protein sequenceShow/hide protein sequence
MPNKVEPNLSSTSVPNNIPSASTSFPCDESQNIPVYNLGDDEDHGSELYGGQDWGEYRDFEEYGDDEDIDTEVDVAVGDDEEEIHKQYTEVPSAPEQYRDKAGYLILVTL
CDTTHLVFDTDAMIQSIHVGDMRVGVSYAMRPLGWGERNPIHSPTLREFPSRLPLDFHQSPASRSLRVIPVVYHVDSLIDAYAQPIRPLGHESEWKRSPQFVDVEVLPPR
RVPRVGRRQTLRISSTGEVRHVRKCSRCGNRGHNRKTCRQPLNNS