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Spg027283 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027283
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationscaffold8:4599078..4599908
RNA-Seq ExpressionSpg027283
SyntenySpg027283
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]6.1e-0429.27Show/hide
Query:  HLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMV---LSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNG
        H R    GRK+ +EE++G R+ +L++++GT AW+RDCL+    LSN       L     +  ++ + IP+G+N  G G    A    L    E      G
Subjt:  HLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMV---LSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNG

Query:  FLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQ
         LK     G ++D   K   S  ++  +GS  D + +       +L  DC + VII+  +  V+
Subjt:  FLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQ

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]7.4e-1829.87Show/hide
Query:  RVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLM------------------------VLSNKRGRFGLLSLESNKGKKSSIFIPE
        ++ I+ K F +  +   RK+ +EE++G    +L++D GT AW+RDCL+                        VL N++GRF +LSLES K +K+ IFIPE
Subjt:  RVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLM------------------------VLSNKRGRFGLLSLESNKGKKSSIFIPE

Query:  GQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQWMGIRE
        G    GW  L   ++ +LP         +G + +K     Q  +  +      ++VR+  T +  +D+      E AF+  S VII+++     W  +++
Subjt:  GQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQWMGIRE

Query:  SCSAMANLGIILKPVCINLAVGLCGSKNEAK
               +    K  C NLAVG+ GS +EAK
Subjt:  SCSAMANLGIILKPVCINLAVGLCGSKNEAK

TrEMBL top hitse value%identityAlignment
A0A0A0KWZ9 Uncharacterized protein8.5e-0457.78Show/hide
Query:  SNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLP
        SN RGRF LLSLES KG+K  IFIPEG    GW +L   ++ +LP
Subjt:  SNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLP

A0A0A0LY03 Uncharacterized protein8.2e-0731.43Show/hide
Query:  IGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCL-------------------------MVLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLET
        +G  RK+ +EE++G +  +LD+D+GT  W+ D L                          VL N   RF ++SL+S KG+K+ +FI EG    GW  L  
Subjt:  IGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCL-------------------------MVLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLET

Query:  AMTEM
         +  M
Subjt:  AMTEM

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X22.9e-0429.27Show/hide
Query:  HLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMV---LSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNG
        H R    GRK+ +EE++G R+ +L++++GT AW+RDCL+    LSN       L     +  ++ + IP+G+N  G G    A    L    E      G
Subjt:  HLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMV---LSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNG

Query:  FLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQ
         LK     G ++D   K   S  ++  +GS  D + +       +L  DC + VII+  +  V+
Subjt:  FLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQ

A0A5D3CQQ0 Uncharacterized protein3.6e-1829.87Show/hide
Query:  RVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLM------------------------VLSNKRGRFGLLSLESNKGKKSSIFIPE
        ++ I+ K F +  +   RK+ +EE++G    +L++D GT AW+RDCL+                        VL N++GRF +LSLES K +K+ IFIPE
Subjt:  RVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLM------------------------VLSNKRGRFGLLSLESNKGKKSSIFIPE

Query:  GQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQWMGIRE
        G    GW  L   ++ +LP         +G + +K     Q  +  +      ++VR+  T +  +D+      E AF+  S VII+++     W  +++
Subjt:  GQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQWMGIRE

Query:  SCSAMANLGIILKPVCINLAVGLCGSKNEAK
               +    K  C NLAVG+ GS +EAK
Subjt:  SCSAMANLGIILKPVCINLAVGLCGSKNEAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGATGGAAGAGGGTGAACATCGAGTGGAAGGTGTTTCACCTTCGCAAGATTGGAGATGGGAGGAAAGTGGTTATGGAGGAGAAACATGGGTCAAGAACGAGTCG
TCTGGATGTGGACGTGGGTACCTTCGCTTGGATTAGGGACTGTCTTATGGTGCTATCTAACAAGAGAGGAAGATTTGGGCTCCTCTCTTTGGAATCAAACAAGGGGAAGA
AATCTTCAATCTTCATTCCTGAGGGTCAGAATCGTAGAGGCTGGGGATTGTTGGAGACGGCCATGACTGAAATGCTCCCCCCTCCCAAAGAGTCGAACCGGTTCGATAAT
GGGTTTCTTAAAAAGAAAGAGAGTTTCGGAGTCCAGATCGACGAAGGGAATAAAAAATCCACCTCCTTTGCGGAAATAGTGAGAAAGGGATCTACGGCAGACATCGAGAG
GGATATTTTACCTTCAGAAGTTGGGGAGCTTGCCTTTGACTGTTCTTCGGCGGTCATCATCGAAAGGATTACCGTCGATGTGCAATGGATGGGTATAAGAGAGTCATGCT
CAGCAATGGCGAATTTAGGTATCATCCTTAAACCCGTTTGTATTAATCTTGCAGTGGGCCTTTGCGGGAGCAAGAATGAAGCTAAGGAGTTGATCGAGGCGTGTAAGGGG
CAGCAACCAGAACACTTCAGCATTCACCCGTGGGATTGCAATATGCTCGTTGAGAGGAAGAGGCTAGCCTTCAAGGGGGTTGGATTACAGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGATGGAAGAGGGTGAACATCGAGTGGAAGGTGTTTCACCTTCGCAAGATTGGAGATGGGAGGAAAGTGGTTATGGAGGAGAAACATGGGTCAAGAACGAGTCG
TCTGGATGTGGACGTGGGTACCTTCGCTTGGATTAGGGACTGTCTTATGGTGCTATCTAACAAGAGAGGAAGATTTGGGCTCCTCTCTTTGGAATCAAACAAGGGGAAGA
AATCTTCAATCTTCATTCCTGAGGGTCAGAATCGTAGAGGCTGGGGATTGTTGGAGACGGCCATGACTGAAATGCTCCCCCCTCCCAAAGAGTCGAACCGGTTCGATAAT
GGGTTTCTTAAAAAGAAAGAGAGTTTCGGAGTCCAGATCGACGAAGGGAATAAAAAATCCACCTCCTTTGCGGAAATAGTGAGAAAGGGATCTACGGCAGACATCGAGAG
GGATATTTTACCTTCAGAAGTTGGGGAGCTTGCCTTTGACTGTTCTTCGGCGGTCATCATCGAAAGGATTACCGTCGATGTGCAATGGATGGGTATAAGAGAGTCATGCT
CAGCAATGGCGAATTTAGGTATCATCCTTAAACCCGTTTGTATTAATCTTGCAGTGGGCCTTTGCGGGAGCAAGAATGAAGCTAAGGAGTTGATCGAGGCGTGTAAGGGG
CAGCAACCAGAACACTTCAGCATTCACCCGTGGGATTGCAATATGCTCGTTGAGAGGAAGAGGCTAGCCTTCAAGGGGGTTGGATTACAGCCCTAG
Protein sequenceShow/hide protein sequence
MDRWKRVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMVLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDN
GFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQWMGIRESCSAMANLGIILKPVCINLAVGLCGSKNEAKELIEACKG
QQPEHFSIHPWDCNMLVERKRLAFKGVGLQP