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Spg027313 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027313
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:41960940..41969554
RNA-Seq ExpressionSpg027313
SyntenySpg027313
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7801170.1 atp synthase subunit beta [Senna tora]2.0e-1569.44Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPGRTSASARSWHRP
        READGG RC PVGCGT  AG PI  G GPM+I  AA+AQA   PVETSSSR W+AARA  R SA ARSW RP
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPGRTSASARSWHRP

KAF7801182.1 atp synthase subunit beta [Senna tora]2.9e-1468.57Show/hide
Query:  ADGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPGRTSASARSWHRP
        ADGG RC PVGCGT  AG PI  G GPM+I  AA+AQA   PVETSSSR W+AARA  R SA ARSW RP
Subjt:  ADGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPGRTSASARSWHRP

OIB70949.1 hypothetical protein A7L08_17970 [Acinetobacter baumannii]1.4e-1682.76Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA
        READGGRRCAPVGCGT RAGPPI  G GPMRI  AA+A+AF KPVETSS RSWLAARA
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA

OXK63765.1 hypothetical protein CDL35_06215, partial [Escherichia coli]1.8e-1682.76Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA
        READGGRRCAPVGCGT RAGPPI  G GPMRI  AA+A+AF KPVETSS RSWLAARA
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA

PAM48491.1 hypothetical protein CEJ59_19905, partial [Acinetobacter baumannii]3.1e-1681.03Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA
        READGGRRCAPVGCGT RAGPPI  G GP+RI  AA+A+AF KPVETSS RSWLAARA
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA

TrEMBL top hitse value%identityAlignment
A0A2Z6P3S7 Retrotrans_gag domain-containing protein2.6e-0861.67Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPG
        READGGRRC PVGCGTV  GPPID GH P RI   A+        ETSSSR  +AAR  G
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPG

A0A6A5KZG0 Uncharacterized protein1.9e-1170.18Show/hide
Query:  EADGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA
        + DGGRRCA VGCGT RAGPPID GHGP RI   A+A+A    VETSSSR WL ARA
Subjt:  EADGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA

A0A6A5L9B8 Uncharacterized protein6.0e-1374.14Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA
        READGGRRCA VGCGT RAGPPID GHGP RI   A+A+A    VETSSSR WL ARA
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA

A0A6A5L9Z0 Uncharacterized protein6.0e-1374.14Show/hide
Query:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA
        READGGRRCA VGCGT RAGPPID GHGP RI   A+A+A    VETSSSR WL ARA
Subjt:  READGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTACCTTGAAGACGTTCTTGATCCACTTCACCAAAAACACCGTTGGACAGAAAATTACAGCAACAAACACCCAACTTTTGACCTTGATCTTGCTGCAAAAATCAC
GAACACCACCACCAAGATTGCACCGGGCATAAAACCCAACAATATCGGTGTTGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTTATTGGCAAGAA
AAGGCGAATTGATCAAGGCTTTCTACAAAAAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCTC
AAGCCTTATAGGGTAAGTGCGAAGGCTCGGCATCTGGTTGCCTCATTGGCCCCGTGGAAGTCCATCCAGGTTAGGGAAGCGGATGGGGGCCGGCGATGTGCCCCAGTCGG
ATGTGGAACGGTGAGAGCCGGTCCGCCGATCGACTTGGGGCATGGACCGATGCGGATTGAGACGGCGGCCAAAGCCCAGGCCTTCGTTAAGCCTGTGGAGACGTCGTCGT
CCCGATCGTGGCTAGCAGCGCGCGCCCCCGGGCGTACTTCGGCATCTGCGCGCTCCTGGCATCGGCCTGAAACACAGAGGAAAGCTGGAATTTACCCAGAAATGCGACCT
CATTTTTGGGAAGGTCAATATCAAATAAGACCGTATATCTGGACAAACAGAGGTCGTTCCGAGTCCGTCGCAGTATTGTCTCTTCCATCGAGACCACACGGGCATTCTAC
CAGAAACTGCATTCAATTGAAGGACGAAATTGAAGCGCTGATTCGAAACGAGTATCTGAAGGAGTTCACCACTAAGAATGCATTGCTGAGCGACTTGAGGGAGCAAATTC
TGTGTTGCAGCAAAGCAAGGAGCAAAACTGCCACGTCACAGCTCGTTAGCCAATTTTATGAACTGAATTCAGTTAAGCTATTCTCGGATTTAAGGAGCAAGGAGAGCCAT
CCACGTGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTACCTTGAAGACGTTCTTGATCCACTTCACCAAAAACACCGTTGGACAGAAAATTACAGCAACAAACACCCAACTTTTGACCTTGATCTTGCTGCAAAAATCAC
GAACACCACCACCAAGATTGCACCGGGCATAAAACCCAACAATATCGGTGTTGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTTATTGGCAAGAA
AAGGCGAATTGATCAAGGCTTTCTACAAAAAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCTC
AAGCCTTATAGGGTAAGTGCGAAGGCTCGGCATCTGGTTGCCTCATTGGCCCCGTGGAAGTCCATCCAGGTTAGGGAAGCGGATGGGGGCCGGCGATGTGCCCCAGTCGG
ATGTGGAACGGTGAGAGCCGGTCCGCCGATCGACTTGGGGCATGGACCGATGCGGATTGAGACGGCGGCCAAAGCCCAGGCCTTCGTTAAGCCTGTGGAGACGTCGTCGT
CCCGATCGTGGCTAGCAGCGCGCGCCCCCGGGCGTACTTCGGCATCTGCGCGCTCCTGGCATCGGCCTGAAACACAGAGGAAAGCTGGAATTTACCCAGAAATGCGACCT
CATTTTTGGGAAGGTCAATATCAAATAAGACCGTATATCTGGACAAACAGAGGTCGTTCCGAGTCCGTCGCAGTATTGTCTCTTCCATCGAGACCACACGGGCATTCTAC
CAGAAACTGCATTCAATTGAAGGACGAAATTGAAGCGCTGATTCGAAACGAGTATCTGAAGGAGTTCACCACTAAGAATGCATTGCTGAGCGACTTGAGGGAGCAAATTC
TGTGTTGCAGCAAAGCAAGGAGCAAAACTGCCACGTCACAGCTCGTTAGCCAATTTTATGAACTGAATTCAGTTAAGCTATTCTCGGATTTAAGGAGCAAGGAGAGCCAT
CCACGTGTCTAG
Protein sequenceShow/hide protein sequence
MTYLEDVLDPLHQKHRWTENYSNKHPTFDLDLAAKITNTTTKIAPGIKPNNIGVADWWCSHKRVAAFSILLARKGELIKAFYKKSVAGRLEGANSVLQQSWEQNCHVTAL
KPYRVSAKARHLVASLAPWKSIQVREADGGRRCAPVGCGTVRAGPPIDLGHGPMRIETAAKAQAFVKPVETSSSRSWLAARAPGRTSASARSWHRPETQRKAGIYPEMRP
HFWEGQYQIRPYIWTNRGRSESVAVLSLPSRPHGHSTRNCIQLKDEIEALIRNEYLKEFTTKNALLSDLREQILCCSKARSKTATSQLVSQFYELNSVKLFSDLRSKESH
PRV