; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027335 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027335
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:41418922..41429503
RNA-Seq ExpressionSpg027335
SyntenySpg027335
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-2657.36Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP
        +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APLRQRRWEC  GP                +  S  LVEIELP
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP

Query:  VPDTLPTSAESSRTSSSTWVELYIESVHI
        VPD LPTSAESSR++SSTW+ELY ESVH+
Subjt:  VPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1749.24Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEI
        LFGL Y EG KRPRGNR+SLQTGELDKT             SLSTLSVLRDNDAV                                          VEI
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEI

Query:  ELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        ELPVPDTLPTSAESS ++SSTW+EL  E VH+
Subjt:  ELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]5.3e-2563.25Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +        PLHRR SKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]5.3e-2563.25Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +        PLHRR SKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-2657.36Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP
        +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APLRQRRWEC  GP                +  S  LVEIELP
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP

Query:  VPDTLPTSAESSRTSSSTWVELYIESVHI
        VPD LPTSAESSR++SSTW+ELY ESVH+
Subjt:  VPDTLPTSAESSRTSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.9e-2657.36Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP
        +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APLRQRRWEC  GP                +  S  LVEIELP
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP

Query:  VPDTLPTSAESSRTSSSTWVELYIESVHI
        VPD LPTSAESSR++SSTW+ELY ESVH+
Subjt:  VPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5A7U9X4 DNA/RNA polymerases superfamily protein8.8e-1849.24Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEI
        LFGL Y EG KRPRGNR+SLQTGELDKT             SLSTLSVLRDNDAV                                          VEI
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEI

Query:  ELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        ELPVPDTLPTSAESS ++SSTW+EL  E VH+
Subjt:  ELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5A7VGQ5 Uncharacterized protein2.6e-2563.25Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +        PLHRR SKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS

A0A5D3BG85 Uncharacterized protein2.6e-2563.25Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +        PLHRR SKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS

A0A5D3BTP3 Reverse transcriptase3.9e-2657.36Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP
        +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APLRQRRWEC  GP                +  S  LVEIELP
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP

Query:  VPDTLPTSAESSRTSSSTWVELYIESVHI
        VPD LPTSAESSR++SSTW+ELY ESVH+
Subjt:  VPDTLPTSAESSRTSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAAATAGTCATCTATCCGTCCA
ACTCTCTAGGCTTCACCGCCGCTTTACCGAGAGTTTGCTCTTATCCAAGACAACTCCTTTCTCCGGAGTACACCCGCTTGCCCAGAGCTCAACCACGGATCTCCCCATGA
CTACTTCAAGGCTCACAACTTCTTTGTTCTGCACCCGAGGATTCTACCCGACACGGCTACGCCTGGGGCATGGCTCTGATACCACTTGTAAGATTGGAATTCCCAATTCC
GATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAATCGGGTCGTATCACATAGTGTTACCAGGATAAGTTCGCGGTGTTC
TGAAACCTATGATCAGGCCCTCCGAAGGGATGGTCGCTCCAGGACGACACGCAGGCGGATCATAAGAATCTCACGGTGCGACCTAGGGGTGGAGACCGTAGGATACGTTG
ACACGCATCCTGCTCCCACTTACTATAGACATTCTCCCCATTCACCTTGGTACCGGGTCAGTTCCCAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATC
AACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGA
GGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTTCTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGAC
GATGGGAGTGCTGGGCGGGCCCCCTACATCGTAGGGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCG
GTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAAATAGTCATCTATCCGTCCA
ACTCTCTAGGCTTCACCGCCGCTTTACCGAGAGTTTGCTCTTATCCAAGACAACTCCTTTCTCCGGAGTACACCCGCTTGCCCAGAGCTCAACCACGGATCTCCCCATGA
CTACTTCAAGGCTCACAACTTCTTTGTTCTGCACCCGAGGATTCTACCCGACACGGCTACGCCTGGGGCATGGCTCTGATACCACTTGTAAGATTGGAATTCCCAATTCC
GATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAATCGGGTCGTATCACATAGTGTTACCAGGATAAGTTCGCGGTGTTC
TGAAACCTATGATCAGGCCCTCCGAAGGGATGGTCGCTCCAGGACGACACGCAGGCGGATCATAAGAATCTCACGGTGCGACCTAGGGGTGGAGACCGTAGGATACGTTG
ACACGCATCCTGCTCCCACTTACTATAGACATTCTCCCCATTCACCTTGGTACCGGGTCAGTTCCCAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATC
AACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGA
GGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTTCTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGAC
GATGGGAGTGCTGGGCGGGCCCCCTACATCGTAGGGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCG
GTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MIIPLSSRCGTLGALPTILPSNKVPPSLPSNSHLSVQLSRLHRRFTESLLLSKTTPFSGVHPLAQSSTTDLPMTTSRLTTSLFCTRGFYPTRLRLGHGSDTTCKIGIPNS
DTPARMSPTWTPWINTSVSNTNRVVSHSVTRISSRCSETYDQALRRDGRSRTTRRRIIRISRCDLGVETVGYVDTHPAPTYYRHSPHSPWYRVSSQGKAHAKPAIAGSEI
NLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELP
VPDTLPTSAESSRTSSSTWVELYIESVHIVNVL