; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027338 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027338
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:42496293..42504863
RNA-Seq ExpressionSpg027338
SyntenySpg027338
Gene Ontology termsNA
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045427.1 uncharacterized protein E6C27_scaffold294G00240 [Cucumis melo var. makuwa]5.6e-2647.74Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE---NKARHGGIEHGNSSTSSVALMEK
        MSS+   GK   +RLVEIEE +LYL EVLD+IRCLES++ EI  K  ADT+ AV   ++G+P+QEL+  ++ LE   N  R    E G SS+   A ME+
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE---NKARHGGIEHGNSSTSSVALMEK

Query:  HADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
            LD++QK +++M+ D+S+D +V  DVV  E+ D++ R++ TMRAM SQAP G
Subjt:  HADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

TYK02461.1 uncharacterized protein E5676_scaffold1738G00820 [Cucumis melo var. makuwa]1.6e-2547.06Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE-NKARHGGIEHGNSSTSSVALMEKHA
        MSST   GKT  +RLVE+EE +LYL EV D+I  LES++ EIS K   DT++AV   ++G+P+QEL+  ++ LE N  R G  E+ +SS+  VA ME   
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE-NKARHGGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        + LD+SQK +++M+ D+S+D +   DV+  E+VD + R+N TMRAM +Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

XP_022940258.1 uncharacterized protein LOC111445936 [Cucurbita moschata]4.6e-2850.33Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA
        MSS KQLGK+  +RLV+IE+ LLY +EVLD ++ LES M EI+TK  AD +  +T  ++ M VQELM+ +E LE KA   GG E+G+SST  VA ME+  
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        ++L+++Q+ IVQMV ++SK ++    VV AEV DL+ ++N TMRA+ +Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

XP_022981546.1 uncharacterized protein LOC111480631 [Cucurbita maxima]1.5e-2648.37Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA
        MS+ KQLGK+  +RLV+IE+ LLY +EVLD ++ LES M EI+ K  AD +  +T  ++ M V+ELM+ +E LE KA   GG E+G+SST  VA ME+  
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        ++L ++Q+ IVQMV ++SK ++    VV AEV DL+ ++N T RA+G+Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

XP_023525752.1 uncharacterized protein LOC111789266 [Cucurbita pepo subsp. pepo]4.6e-2849.67Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA
        MS+ KQLGK+  +RLV+IE+ LLY +EVLD ++ LES M EI+TK  AD +  +T  ++ M V+ELM+ +E LE KA   GG E+G+SST  VA ME+  
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        ++L+++Q+ IVQMV ++SK ++    VV AEV DL+ ++N TMRA+G+Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

TrEMBL top hitse value%identityAlignment
A0A5A7TUB9 Retrotrans_gag domain-containing protein2.7e-2647.74Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE---NKARHGGIEHGNSSTSSVALMEK
        MSS+   GK   +RLVEIEE +LYL EVLD+IRCLES++ EI  K  ADT+ AV   ++G+P+QEL+  ++ LE   N  R    E G SS+   A ME+
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE---NKARHGGIEHGNSSTSSVALMEK

Query:  HADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
            LD++QK +++M+ D+S+D +V  DVV  E+ D++ R++ TMRAM SQAP G
Subjt:  HADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

A0A5D3BRU5 Uncharacterized protein7.9e-2647.06Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE-NKARHGGIEHGNSSTSSVALMEKHA
        MSST   GKT  +RLVE+EE +LYL EV D+I  LES++ EIS K   DT++AV   ++G+P+QEL+  ++ LE N  R G  E+ +SS+  VA ME   
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE-NKARHGGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        + LD+SQK +++M+ D+S+D +   DV+  E+VD + R+N TMRAM +Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

A0A5D3BYE6 Reverse transcriptase1.0e-2547.1Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE---NKARHGGIEHGNSSTSSVALMEK
        MSS+  LGK   +RLVE+EE +LYL EV D+IR LES+++EIS K N  T++AV   ++G P+QELM  ++ LE   N  R    E G+SST SVA +E+
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLE---NKARHGGIEHGNSSTSSVALMEK

Query:  HADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
            LD+SQK +++M+  +S+D +   DVV  E+ D++ R++ TMRAM +QAP G
Subjt:  HADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

A0A6J1FNS3 uncharacterized protein LOC1114459362.2e-2850.33Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA
        MSS KQLGK+  +RLV+IE+ LLY +EVLD ++ LES M EI+TK  AD +  +T  ++ M VQELM+ +E LE KA   GG E+G+SST  VA ME+  
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        ++L+++Q+ IVQMV ++SK ++    VV AEV DL+ ++N TMRA+ +Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

A0A6J1IU93 uncharacterized protein LOC1114806317.2e-2748.37Show/hide
Query:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA
        MS+ KQLGK+  +RLV+IE+ LLY +EVLD ++ LES M EI+ K  AD +  +T  ++ M V+ELM+ +E LE KA   GG E+G+SST  VA ME+  
Subjt:  MSSTKQLGKTHVERLVEIEELLLYLSEVLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARH-GGIEHGNSSTSSVALMEKHA

Query:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG
        ++L ++Q+ IVQMV ++SK ++    VV AEV DL+ ++N T RA+G+Q P+G
Subjt:  DNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVRINPTMRAMGSQAPIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67150.1 Plant protein of unknown function (DUF247)5.8e-0529.67Show/hide
Query:  LFLQGVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFEHFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLL
        L+  GV FK  K+EY     +++SFE+G L +P F  D++     RN++A+E         +  +  N +   +  F++ LI++++DV++L
Subjt:  LFLQGVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFEHFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLL

AT1G67150.2 Plant protein of unknown function (DUF247)5.8e-0529.67Show/hide
Query:  LFLQGVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFEHFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLL
        L+  GV FK  K+EY     +++SFE+G L +P F  D++     RN++A+E         +  +  N +   +  F++ LI++++DV++L
Subjt:  LFLQGVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFEHFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLL

AT2G28580.1 Plant protein of unknown function (DUF247)3.7e-0739.73Show/hide
Query:  ISFEDGVLTIPPFRIDDNFEAFARNLMAFE--HFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLLMK
        I+F+DG+L +P F ++DN E   RNLMA E  H+P              +   + +FLD LI+T++DV LL K
Subjt:  ISFEDGVLTIPPFRIDDNFEAFARNLMAFE--HFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLLMK

AT2G44930.1 Plant protein of unknown function (DUF247)4.3e-0845.21Show/hide
Query:  ISFEDGVLTIPPFRIDDNFEAFARNLMAFE--HFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLLMK
        I+FE G+L IP F  DDN E   RNLMA E  H+P+             Y   + AFLD LI T++DV LL+K
Subjt:  ISFEDGVLTIPPFRIDDNFEAFARNLMAFE--HFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLLMK

AT3G60470.1 Plant protein of unknown function (DUF247)2.8e-0738.46Show/hide
Query:  GVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFE--HFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLLMK
        GV FK    E+     +D++FE+G L IP   + D+ E   RN+MA E  H+P           F  Y     +FLD LI T+KDV LLM+
Subjt:  GVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFE--HFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSLLMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAAAGTTACGATCAATTCGATAAGGTAGAATTTTCAAAACCCGAACTTTTAACCTTATTTCTACAAGGTGTTCTCTTTAAGAGACAGAAAAAAGAATATGAACA
AATACACATTATGGACATAAGTTTCGAAGATGGTGTTTTGACAATTCCACCTTTTCGAATCGATGATAACTTTGAAGCATTTGCTCGAAATTTGATGGCATTTGAGCATT
TTCCAATGGTGAATACTGAGAAGAAAAATGAGGAACACTTTAACAAGTATGCAATCCAGCACTTTGCTTTCTTAGATGGGTTGATAAGCACCGAGAAAGATGTGAGTTTA
CTTATGAAGATTCCAACTTTAGGAGCCAACCTGGCTCTGATACCAACTGTCATAACCGCAGCTATCAAGCAAGGGGTACAACTAGTTGTCAATCCTTCTTACCCAGAGCT
GTTTGCTATCGTCAAGCTTGTGGTTGTTTCTTTTATTTACATGATAAATGGGGGTAAAGGTTGCGATATAGGCACATTGTGCCATCGACGATCCAAATTTGAATTGACTG
ACTTACTCATGGGTGAGAAATCCAAGATCATGTCATCAACAAAGCAGTTGGGTAAGACCCATGTTGAACGATTAGTGGAGATTGAAGAGCTATTGCTTTATCTGAGCGAA
GTCCTTGATGCAATTCGATGCTTGGAATCGCAAATGAAAGAGATTTCAACTAAGGCCAATGCCGACACGGTTGAGGCAGTAACTAGCCACATGGATGGGATGCCCGTCCA
AGAATTGATGGTGACGATTGAAAACCTTGAAAATAAAGCTAGACATGGTGGCATCGAGCATGGGAATAGCTCAACGAGCTCTGTTGCCCTAATGGAGAAGCATGCCGACA
ATTTGGACAACTCCCAGAAAGCAATAGTCCAAATGGTTATGGACTTATCAAAAGACGTGAAAGTTGCCTTCGATGTCGTTAGTGCTGAAGTGGTGGATTTGAGTGTCAGG
ATAAACCCCACCATGAGAGCAATGGGGAGCCAAGCCCCGATAGGGGAGGGGGAAACAGAAATAGTCGTCCTAGCTCCCCTAAGAGTGGAGGAGGACGAGACAAGTCAGGA
GGGAGAGATCGTAGACCCTTCCAGCAGAGAGGTAGAAATTCATGGCGAGGGTCATACCAACAGAACAACAATCATAAGCCCCCTCCATGTTTCATATTGTAAGGGGACCA
TCGAGTATCCAACTGCCCGAAGGGGGCGGCCCAACAAGCATTTCAAGCCACATTTACTGCCGACTAAAGCTGAAACAAAAATCATGGAAGTCGAAACACCGCAAGTTGAA
ACTGATGACAACCCTCGTATGGGGGCGTTGAAATTCCTTTTTGTCCTTCATAAGAAAAATGGGGGTGGAGGTTGCAAATGCGATATAGACACATTGTGCCATCGGAGATT
CAATTTTAAATTGGCTGACTTACTCGTGGGCAAGATTGCTAGAAGTGATGCAACACCCTTTCCTCTCATCCATGAGATTCAACCAAAAGCCAAAAGGGGTGGAAGTGTTA
AAGATTCCATCCAAGAGTGCCTCCTCTGTGAAAAGGGCTTAGGCTACCTGTGTAGTCAAGTTCCTATGGGGAAAGGTTACACTCCCTTGGCAAGGAACAATGGTCATCGA
GGGCTTCATCTTAATGAAGGACTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAAAGTTACGATCAATTCGATAAGGTAGAATTTTCAAAACCCGAACTTTTAACCTTATTTCTACAAGGTGTTCTCTTTAAGAGACAGAAAAAAGAATATGAACA
AATACACATTATGGACATAAGTTTCGAAGATGGTGTTTTGACAATTCCACCTTTTCGAATCGATGATAACTTTGAAGCATTTGCTCGAAATTTGATGGCATTTGAGCATT
TTCCAATGGTGAATACTGAGAAGAAAAATGAGGAACACTTTAACAAGTATGCAATCCAGCACTTTGCTTTCTTAGATGGGTTGATAAGCACCGAGAAAGATGTGAGTTTA
CTTATGAAGATTCCAACTTTAGGAGCCAACCTGGCTCTGATACCAACTGTCATAACCGCAGCTATCAAGCAAGGGGTACAACTAGTTGTCAATCCTTCTTACCCAGAGCT
GTTTGCTATCGTCAAGCTTGTGGTTGTTTCTTTTATTTACATGATAAATGGGGGTAAAGGTTGCGATATAGGCACATTGTGCCATCGACGATCCAAATTTGAATTGACTG
ACTTACTCATGGGTGAGAAATCCAAGATCATGTCATCAACAAAGCAGTTGGGTAAGACCCATGTTGAACGATTAGTGGAGATTGAAGAGCTATTGCTTTATCTGAGCGAA
GTCCTTGATGCAATTCGATGCTTGGAATCGCAAATGAAAGAGATTTCAACTAAGGCCAATGCCGACACGGTTGAGGCAGTAACTAGCCACATGGATGGGATGCCCGTCCA
AGAATTGATGGTGACGATTGAAAACCTTGAAAATAAAGCTAGACATGGTGGCATCGAGCATGGGAATAGCTCAACGAGCTCTGTTGCCCTAATGGAGAAGCATGCCGACA
ATTTGGACAACTCCCAGAAAGCAATAGTCCAAATGGTTATGGACTTATCAAAAGACGTGAAAGTTGCCTTCGATGTCGTTAGTGCTGAAGTGGTGGATTTGAGTGTCAGG
ATAAACCCCACCATGAGAGCAATGGGGAGCCAAGCCCCGATAGGGGAGGGGGAAACAGAAATAGTCGTCCTAGCTCCCCTAAGAGTGGAGGAGGACGAGACAAGTCAGGA
GGGAGAGATCGTAGACCCTTCCAGCAGAGAGGTAGAAATTCATGGCGAGGGTCATACCAACAGAACAACAATCATAAGCCCCCTCCATGTTTCATATTGTAAGGGGACCA
TCGAGTATCCAACTGCCCGAAGGGGGCGGCCCAACAAGCATTTCAAGCCACATTTACTGCCGACTAAAGCTGAAACAAAAATCATGGAAGTCGAAACACCGCAAGTTGAA
ACTGATGACAACCCTCGTATGGGGGCGTTGAAATTCCTTTTTGTCCTTCATAAGAAAAATGGGGGTGGAGGTTGCAAATGCGATATAGACACATTGTGCCATCGGAGATT
CAATTTTAAATTGGCTGACTTACTCGTGGGCAAGATTGCTAGAAGTGATGCAACACCCTTTCCTCTCATCCATGAGATTCAACCAAAAGCCAAAAGGGGTGGAAGTGTTA
AAGATTCCATCCAAGAGTGCCTCCTCTGTGAAAAGGGCTTAGGCTACCTGTGTAGTCAAGTTCCTATGGGGAAAGGTTACACTCCCTTGGCAAGGAACAATGGTCATCGA
GGGCTTCATCTTAATGAAGGACTTCAATAG
Protein sequenceShow/hide protein sequence
MLQSYDQFDKVEFSKPELLTLFLQGVLFKRQKKEYEQIHIMDISFEDGVLTIPPFRIDDNFEAFARNLMAFEHFPMVNTEKKNEEHFNKYAIQHFAFLDGLISTEKDVSL
LMKIPTLGANLALIPTVITAAIKQGVQLVVNPSYPELFAIVKLVVVSFIYMINGGKGCDIGTLCHRRSKFELTDLLMGEKSKIMSSTKQLGKTHVERLVEIEELLLYLSE
VLDAIRCLESQMKEISTKANADTVEAVTSHMDGMPVQELMVTIENLENKARHGGIEHGNSSTSSVALMEKHADNLDNSQKAIVQMVMDLSKDVKVAFDVVSAEVVDLSVR
INPTMRAMGSQAPIGEGETEIVVLAPLRVEEDETSQEGEIVDPSSREVEIHGEGHTNRTTIISPLHVSYCKGTIEYPTARRGRPNKHFKPHLLPTKAETKIMEVETPQVE
TDDNPRMGALKFLFVLHKKNGGGGCKCDIDTLCHRRFNFKLADLLVGKIARSDATPFPLIHEIQPKAKRGGSVKDSIQECLLCEKGLGYLCSQVPMGKGYTPLARNNGHR
GLHLNEGLQ