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Spg027349 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027349
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:43610144..43612355
RNA-Seq ExpressionSpg027349
SyntenySpg027349
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.2e-0851.72Show/hide
Query:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG
        GNR SLQT +L KT                 VEIELPV DTLP S ESS S+S S         + EDDV WLHV+FR K AGGPGG
Subjt:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.9e-0944.79Show/hide
Query:  GNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHVIFRTKLAGGPGG
        GNR +L T KL KTVEIELPVPDTLPTS ESS+S+SS+  +                          EG    +  DD+ WLH +F  K AG PGG
Subjt:  GNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHVIFRTKLAGGPGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]2.0e-0952.87Show/hide
Query:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG
        GNR SLQT KL KT                 VEIELPVPDTLPTS ES  S+S ST        +  DDV WLH +FR K AGGPGG
Subjt:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0857.58Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG
        VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLH +FR K AGGPGG
Subjt:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0857.58Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG
        VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLH +FR K AGGPGG
Subjt:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein2.9e-0944.79Show/hide
Query:  GNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHVIFRTKLAGGPGG
        GNR +L T KL KTVEIELPVPDTLPTS ESS+S+SS+  +                          EG    +  DD+ WLH +F  K AG PGG
Subjt:  GNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHVIFRTKLAGGPGG

A0A5A7VMG9 Reverse transcriptase1.1e-0857.58Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG
        VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLH +FR K AGGPGG
Subjt:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein9.8e-1052.87Show/hide
Query:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG
        GNR SLQT KL KT                 VEIELPVPDTLPTS ES  S+S ST        +  DDV WLH +FR K AGGPGG
Subjt:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.1e-0851.72Show/hide
Query:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG
        GNR SLQT +L KT                 VEIELPV DTLP S ESS S+S S         + EDDV WLHV+FR K AGGPGG
Subjt:  GNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGG

A0A5D3DX39 Reverse transcriptase1.1e-0857.58Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG
        VEIELPVPDTLPTS ESS S+SS+  +        E  W++  + EDDV WLH +FR K AGGPGG
Subjt:  VEIELPVPDTLPTSTESSRSSSSSTFQ--------EGQWVS--LEEDDVHWLHVIFRTKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGGGTGTGTGTGCGGAGCGTGACGCGGAAATCACGTGTGGGTGTGAGTGCGGAGCGTGACGCAGAAATCACGTGTGAGTGGCGCTGCGCATGGCGCGTAATAAT
ACATGTGTTGGGTGGGTTTGCGGAGCGAGATGCAGAAATCACGTGTGGGTTGTGTGTGCGGAGCGTGATGCGGAAGTCATGTGTGAGTGTGCGGGCATGGCGCGGAAACC
ATGTGGGGGTGCATAACATGATGCGTGGATTCATAGCACTTGAGGGAGAGGGTGAAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAG
CTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAGTTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTG
GCTTCACGTCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGATTATGCAAGTGATGAGCTTTATGTGCCCGGTGATGTGGATGAGGAGGTTCACGAGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGGGTGTGTGTGCGGAGCGTGACGCGGAAATCACGTGTGGGTGTGAGTGCGGAGCGTGACGCAGAAATCACGTGTGAGTGGCGCTGCGCATGGCGCGTAATAAT
ACATGTGTTGGGTGGGTTTGCGGAGCGAGATGCAGAAATCACGTGTGGGTTGTGTGTGCGGAGCGTGATGCGGAAGTCATGTGTGAGTGTGCGGGCATGGCGCGGAAACC
ATGTGGGGGTGCATAACATGATGCGTGGATTCATAGCACTTGAGGGAGAGGGTGAAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAG
CTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAGTTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTG
GCTTCACGTCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGATTATGCAAGTGATGAGCTTTATGTGCCCGGTGATGTGGATGAGGAGGTTCACGAGCTATGA
Protein sequenceShow/hide protein sequence
MCWVCVRSVTRKSRVGVSAERDAEITCEWRCAWRVIIHVLGGFAERDAEITCGLCVRSVMRKSCVSVRAWRGNHVGVHNMMRGFIALEGEGEGNRSSLQTRKLAKTVEIE
LPVPDTLPTSTESSRSSSSSTFQEGQWVSLEEDDVHWLHVIFRTKLAGGPGGDYASDELYVPGDVDEEVHEL