; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027353 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027353
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold7:43218919..43226695
RNA-Seq ExpressionSpg027353
SyntenySpg027353
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-0851.85Show/hide
Query:  PDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ
        P++MSV   D  T E+RM E++KKINML+  VKEKD EIASL+N +ESRDVAE   K     + V + DKG  IM   + Q
Subjt:  PDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ

KAA0047487.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-0833.11Show/hide
Query:  QEIINLASRSSKKPNKPAQEEQQDNQTSVIANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPN-ETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLK
        + + ++  RS+ +      +  +D     +A  +  ++ K  + EI    NL++ +   S +  N E   P +MSV +TD  T E+RMA+++KKINML+K
Subjt:  QEIINLASRSSKKPNKPAQEEQQDNQTSVIANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPN-ETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLK

Query:  MVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ
         ++E+D EIASL+N  ESRD AE        +++V + DKG   M   + Q
Subjt:  MVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-0837.7Show/hide
Query:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQ-QPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ
        +A  +  +++K  +  I    N  + +   SS+    E S P++MSV +T+  T E RMAE++KK+NML+K+V+E+D EIA L+N +ESRD AE   K  
Subjt:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQ-QPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ

Query:  DTVNLVVHEDKGSTIMTRKKKQ
           ++V + DKG  +M   + Q
Subjt:  DTVNLVVHEDKGSTIMTRKKKQ

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-0836.89Show/hide
Query:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPNETS-SPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ
        +A  +  +++K  +  +    NL + K    S++ NE +   ++MSV +TD    E+RMAE++KK+NML+K+V+E+D EIA L+N +ESRD AE   K  
Subjt:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPNETS-SPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ

Query:  DTVNLVVHEDKGSTIMTRKKKQ
           + V + DKG  +M   + Q
Subjt:  DTVNLVVHEDKGSTIMTRKKKQ

TYK20963.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0853.09Show/hide
Query:  PDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ
        P++MSV   D  T E+RM E++KKINML+  VKEKD EIASL+N +ESRDVAEL  K     + V + DKG  IM   + Q
Subjt:  PDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ

TrEMBL top hitse value%identityAlignment
A0A5A7TZV9 Ty3-gypsy retrotransposon protein1.8e-0833.11Show/hide
Query:  QEIINLASRSSKKPNKPAQEEQQDNQTSVIANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPN-ETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLK
        + + ++  RS+ +      +  +D     +A  +  ++ K  + EI    NL++ +   S +  N E   P +MSV +TD  T E+RMA+++KKINML+K
Subjt:  QEIINLASRSSKKPNKPAQEEQQDNQTSVIANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPN-ETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLK

Query:  MVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ
         ++E+D EIASL+N  ESRD AE        +++V + DKG   M   + Q
Subjt:  MVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ

A0A5A7UXF0 Ty3-gypsy retrotransposon protein1.4e-0837.7Show/hide
Query:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQ-QPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ
        +A  +  +++K  +  I    N  + +   SS+    E S P++MSV +T+  T E RMAE++KK+NML+K+V+E+D EIA L+N +ESRD AE   K  
Subjt:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQ-QPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ

Query:  DTVNLVVHEDKGSTIMTRKKKQ
           ++V + DKG  +M   + Q
Subjt:  DTVNLVVHEDKGSTIMTRKKKQ

A0A5D3C4W1 Ty3-gypsy retrotransposon protein2.3e-0834.03Show/hide
Query:  KKPNKPAQEEQ----QDNQTSVIANKMLRRMTKSTQLEIATTPNLMLGK-FICSSQQPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQ
        K+PN  ++  +    +D     +A  +  +++K  +  I    N  + + +  S     E + P++MSV +TD  T E RM E++KK+NML+K+V+E+D 
Subjt:  KKPNKPAQEEQ----QDNQTSVIANKMLRRMTKSTQLEIATTPNLMLGK-FICSSQQPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQ

Query:  EIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ
        EIASL+N +ESRD AE   K     + V + DKG  +M   + Q
Subjt:  EIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ

A0A5D3D4X3 Ty3-gypsy retrotransposon protein2.3e-0836.89Show/hide
Query:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPNETS-SPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ
        +A  +  +++K  +  +    NL + K    S++ NE +   ++MSV +TD    E+RMAE++KK+NML+K+V+E+D EIA L+N +ESRD AE   K  
Subjt:  IANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPNETS-SPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQ

Query:  DTVNLVVHEDKGSTIMTRKKKQ
           + V + DKG  +M   + Q
Subjt:  DTVNLVVHEDKGSTIMTRKKKQ

A0A5D3DBL9 Ty3-gypsy retrotransposon protein7.9e-0953.09Show/hide
Query:  PDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ
        P++MSV   D  T E+RM E++KKINML+  VKEKD EIASL+N +ESRDVAEL  K     + V + DKG  IM   + Q
Subjt:  PDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCTGATCCAACAGATCATCAAGCCAACAGGTCGATCTAAAAGAACGTCAAGCCAGCAGGCCGATCATCCAAGGAG
ATCAACAACTCACAATAGGCCGATCCAAAAGATCATTAAGCTAGTAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGACCATCAAACCAACAAG
CCGATCCAAGAGATCATGAAGCCAACATGCCGATCCAAGAGATCATCAACTTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGACAAC
CAAACTTCTGTCATTGCAAACAAGATGTTGAGACGCATGACGAAATCTACTCAACTTGAAATTGCCACTACACCAAATCTAATGCTTGGCAAATTCATCTGTTCTTCTCA
GCAACCAAACGAAACATCCAGTCCTGATGTGATGTCCGTTACGATGACTGATGCAGGAACTGGTGAAGAACGAATGGCTGAAGTTCAGAAGAAAATAAACATGTTACTGA
AGATGGTCAAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGAGATGTCGCTGAATTGAGAGACAAATCTCAAGATACAGTCAATCTTGTCGTC
CATGAAGATAAAGGAAGTACTATCATGACTCGTAAGAAGAAACAAGGACGACATCTCGTTCAAAAAGGATGTTGCTCGTCCAAAAGAATGAATAAACATCGAAGACCGAA
GAATCTAAGGAAACCTAAACTTGAGAAAGAAATAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTAAAAGAATCATCCTCGAGAACTTTTTGTCCCATCAAGA
AAGTGGAAGAAAATTTTGCAAGTTCACGTTATATCAACGTAGAAGAAGATGGTGGATCGAAGGAAATCAAGCATAGGACAGATGTCTTTGATCGCATTGAGCCTTCAACT
ACTCGACCTTCGGCAAATCTGGTGACCACCCCTGCAGAAAACTACGGTCATCAAAGTGACTGGTCTAAACAGGTGGTGAAATCACTGCAAGCAAATCTGGTGACCACCAC
TGCAGGATACTACGGTCATCAAAGTGACTGGTCTATACAGGAGCAGCGCGCTTCAATTCGAATATTCGTCGCGATTCTTCAACCCATCACGTCGGCAACGGTTACGACGG
CAAAAGCAGCATCACGGCCATTCACAACTCTGGTGCGGCTCCGCCCCTTCCTCATAGCCTCCAAGCAGACCCAGAAGACATTACAATATATTATCTCTTGGCACTCCAGC
AGACTTGCTGCGGCCACATCTTCAAAGAAGATTCAGAGAGAGAGAGTCAAGAGAATTCTGCAAGAGTCTAGAGTTGTCAGCAGCCAAAGAGTCCAAAGAGTTCATAAGGG
TTCGAGATTCAGAATTCAGAGGATCCAAGACTCAGAAGGTTTGAAGACTAGAATACTCCAAGAAGAGATCGACAAGCCAACCGACCGATCAAGAAGATTAACAAGTCAGC
AAGGCGATCATCTAAGAAGATCAACAAGCCAACCGACCAATCGAGAGGATCAACAACTCAGTAGGTCGATCATCCAAGAGGATCAACAAGCTAACAAGCTGATCCAACAG
ATCATCAAGCCAACAGGCCGATCCAAAAGAATGTCAAGCCAGCAGGCCGATCATCCAAGGAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGTAGG
TCGATCATCCAAGAAGATCAACAAGCCAGTAAGCCGATCCAAGAGATCATCAAACCAACAAGCCGATCGAAGAGATAATAAAGCCAAAAGGTCGATCCAAGAGATCATCA
ACCTAGCAAGTCAATCATCGAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAGGTTTATATATTTATGAGAAAGAATCAGAGGATAAATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCTGATCCAACAGATCATCAAGCCAACAGGTCGATCTAAAAGAACGTCAAGCCAGCAGGCCGATCATCCAAGGAG
ATCAACAACTCACAATAGGCCGATCCAAAAGATCATTAAGCTAGTAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGACCATCAAACCAACAAG
CCGATCCAAGAGATCATGAAGCCAACATGCCGATCCAAGAGATCATCAACTTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGACAAC
CAAACTTCTGTCATTGCAAACAAGATGTTGAGACGCATGACGAAATCTACTCAACTTGAAATTGCCACTACACCAAATCTAATGCTTGGCAAATTCATCTGTTCTTCTCA
GCAACCAAACGAAACATCCAGTCCTGATGTGATGTCCGTTACGATGACTGATGCAGGAACTGGTGAAGAACGAATGGCTGAAGTTCAGAAGAAAATAAACATGTTACTGA
AGATGGTCAAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGAGATGTCGCTGAATTGAGAGACAAATCTCAAGATACAGTCAATCTTGTCGTC
CATGAAGATAAAGGAAGTACTATCATGACTCGTAAGAAGAAACAAGGACGACATCTCGTTCAAAAAGGATGTTGCTCGTCCAAAAGAATGAATAAACATCGAAGACCGAA
GAATCTAAGGAAACCTAAACTTGAGAAAGAAATAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTAAAAGAATCATCCTCGAGAACTTTTTGTCCCATCAAGA
AAGTGGAAGAAAATTTTGCAAGTTCACGTTATATCAACGTAGAAGAAGATGGTGGATCGAAGGAAATCAAGCATAGGACAGATGTCTTTGATCGCATTGAGCCTTCAACT
ACTCGACCTTCGGCAAATCTGGTGACCACCCCTGCAGAAAACTACGGTCATCAAAGTGACTGGTCTAAACAGGTGGTGAAATCACTGCAAGCAAATCTGGTGACCACCAC
TGCAGGATACTACGGTCATCAAAGTGACTGGTCTATACAGGAGCAGCGCGCTTCAATTCGAATATTCGTCGCGATTCTTCAACCCATCACGTCGGCAACGGTTACGACGG
CAAAAGCAGCATCACGGCCATTCACAACTCTGGTGCGGCTCCGCCCCTTCCTCATAGCCTCCAAGCAGACCCAGAAGACATTACAATATATTATCTCTTGGCACTCCAGC
AGACTTGCTGCGGCCACATCTTCAAAGAAGATTCAGAGAGAGAGAGTCAAGAGAATTCTGCAAGAGTCTAGAGTTGTCAGCAGCCAAAGAGTCCAAAGAGTTCATAAGGG
TTCGAGATTCAGAATTCAGAGGATCCAAGACTCAGAAGGTTTGAAGACTAGAATACTCCAAGAAGAGATCGACAAGCCAACCGACCGATCAAGAAGATTAACAAGTCAGC
AAGGCGATCATCTAAGAAGATCAACAAGCCAACCGACCAATCGAGAGGATCAACAACTCAGTAGGTCGATCATCCAAGAGGATCAACAAGCTAACAAGCTGATCCAACAG
ATCATCAAGCCAACAGGCCGATCCAAAAGAATGTCAAGCCAGCAGGCCGATCATCCAAGGAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGTAGG
TCGATCATCCAAGAAGATCAACAAGCCAGTAAGCCGATCCAAGAGATCATCAAACCAACAAGCCGATCGAAGAGATAATAAAGCCAAAAGGTCGATCCAAGAGATCATCA
ACCTAGCAAGTCAATCATCGAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAGGTTTATATATTTATGAGAAAGAATCAGAGGATAAATATTAG
Protein sequenceShow/hide protein sequence
MPIIQEDQQANKLIQQIIKPTGRSKRTSSQQADHPRRSTTHNRPIQKIIKLVGRSSKKINKPISRSKRPSNQQADPRDHEANMPIQEIINLASRSSKKPNKPAQEEQQDN
QTSVIANKMLRRMTKSTQLEIATTPNLMLGKFICSSQQPNETSSPDVMSVTMTDAGTGEERMAEVQKKINMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVV
HEDKGSTIMTRKKKQGRHLVQKGCCSSKRMNKHRRPKNLRKPKLEKEINQDPSQHRQLVTLKESSSRTFCPIKKVEENFASSRYINVEEDGGSKEIKHRTDVFDRIEPST
TRPSANLVTTPAENYGHQSDWSKQVVKSLQANLVTTTAGYYGHQSDWSIQEQRASIRIFVAILQPITSATVTTAKAASRPFTTLVRLRPFLIASKQTQKTLQYIISWHSS
RLAAATSSKKIQRERVKRILQESRVVSSQRVQRVHKGSRFRIQRIQDSEGLKTRILQEEIDKPTDRSRRLTSQQGDHLRRSTSQPTNREDQQLSRSIIQEDQQANKLIQQ
IIKPTGRSKRMSSQQADHPRRSTSHNRPIQEIIKPVGRSSKKINKPVSRSKRSSNQQADRRDNKAKRSIQEIINLASQSSKKPNKPAQEEQQARGQGLYIYEKESEDKY