; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027356 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027356
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold7:43674960..43678139
RNA-Seq ExpressionSpg027356
SyntenySpg027356
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]9.6e-3250.57Show/hide
Query:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST
        + + F QP++ +T+ E   ++F +   E        H              EEVDNS + +QRTSVF+RIKP TTR  VFQR+SM   EEENQC MST  
Subjt:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST

Query:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        R SAF+RL +STSKK R S S FDRLK+TNDQ +R++ + + K F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-3350.25Show/hide
Query:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTF---HKKEKENFATSYCIHI----------EEVDNSKKGEQRTSVFNRIKPSTTRPSV
        I H K    N+ + +S   + + ++F QP+Q +T+ E F ++F   H KE       +   I          EEVDNS + +QRTSVF+RIKP TTR SV
Subjt:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTF---HKKEKENFATSYCIHI----------EEVDNSKKGEQRTSVFNRIKPSTTRPSV

Query:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        FQR+S+T  EEENQC  ST TR SAF+ L +STSKK R S S FDRLK+ NDQ +R++ +L+VK F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.3e-3150Show/hide
Query:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST
        + ++F QP++ +T+ E   ++F +   E        H              EEVDNS + +QRTS+F+RIKP TTR  VFQR+SM   EEENQC  ST  
Subjt:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST

Query:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        R SAF+RL +STSKK R S S FDRLK+TNDQ +R++ +L+ K F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-3147.21Show/hide
Query:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIHI-------------EEVDNSKKGEQRTSVFNRIKPSTTRPSV
        I H K    N+ + +S   + + ++F QP++ +T+ E   ++F +   E        HI             EEVDNS + +Q+TSVF+RIKP TTR SV
Subjt:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIHI-------------EEVDNSKKGEQRTSVFNRIKPSTTRPSV

Query:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        FQR+SM   EEENQC M T  + SAF+RL +STS K R S S FDRLK+TNDQ +R++ +L+ K F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]4.3e-3249.43Show/hide
Query:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST
        + K+F QP++ +T+ +   ++F +   E        H              EE+DNS + +Q+TS+F+RIKP TTR SVFQR+SM   EEENQC  ST  
Subjt:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST

Query:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        R SAF+RL +STSKK R S S FDRLK+TNDQ +R++ +L+ K F E N D K+ S VPSRMKRK S+ INTKGSL
Subjt:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein4.6e-3250.57Show/hide
Query:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST
        + + F QP++ +T+ E   ++F +   E        H              EEVDNS + +QRTSVF+RIKP TTR  VFQR+SM   EEENQC MST  
Subjt:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST

Query:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        R SAF+RL +STSKK R S S FDRLK+TNDQ +R++ + + K F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

A0A5A7TGM1 Retrotransposon gag protein1.1e-3350.25Show/hide
Query:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTF---HKKEKENFATSYCIHI----------EEVDNSKKGEQRTSVFNRIKPSTTRPSV
        I H K    N+ + +S   + + ++F QP+Q +T+ E F ++F   H KE       +   I          EEVDNS + +QRTSVF+RIKP TTR SV
Subjt:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTF---HKKEKENFATSYCIHI----------EEVDNSKKGEQRTSVFNRIKPSTTRPSV

Query:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        FQR+S+T  EEENQC  ST TR SAF+ L +STSKK R S S FDRLK+ NDQ +R++ +L+VK F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

A0A5A7VRG7 Retrotransposon gag protein1.8e-3147.21Show/hide
Query:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIHI-------------EEVDNSKKGEQRTSVFNRIKPSTTRPSV
        I H K    N+ + +S   + + ++F QP++ +T+ E   ++F +   E        HI             EEVDNS + +Q+TSVF+RIKP TTR SV
Subjt:  IEHLKSQIENQHIAESSQTQ-RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIHI-------------EEVDNSKKGEQRTSVFNRIKPSTTRPSV

Query:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        FQR+SM   EEENQC M T  + SAF+RL +STS K R S S FDRLK+TNDQ +R++ +L+ K F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  FQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

A0A5D3BBF9 Gag protease polyprotein6.1e-3250Show/hide
Query:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST
        + ++F QP++ +T+ E   ++F +   E        H              EEVDNS + +QRTS+F+RIKP TTR  VFQR+SM   EEENQC  ST  
Subjt:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST

Query:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        R SAF+RL +STSKK R S S FDRLK+TNDQ +R++ +L+ K F E N D K+ S VPSRMKRK SV INT+GSL
Subjt:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

A0A5D3D5Q0 Gag protease polyprotein2.1e-3249.43Show/hide
Query:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST
        + K+F QP++ +T+ +   ++F +   E        H              EE+DNS + +Q+TS+F+RIKP TTR SVFQR+SM   EEENQC  ST  
Subjt:  RSKEFFQPQQPVTVKELFSKTFHKKEKENFATSYCIH-------------IEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTST

Query:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL
        R SAF+RL +STSKK R S S FDRLK+TNDQ +R++ +L+ K F E N D K+ S VPSRMKRK S+ INTKGSL
Subjt:  RPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNSDKKLQSIVPSRMKRKFSVLINTKGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGAAGAAACAACCTTGCAAGGGGCATATACCAATGACAAGTTTCTTGTTAAGTACAACCCTCTGTTTGAACTTGATTCTGAAGTAGTGACTGTCATGATGAC
TGAGACAAGAACTATAGAAGAAAGAATGACTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGTCAGA
TTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTTTCAACCTCAACAACCAGTGACTGTGAAGGAACTTTTCTCCAAAACTTTCCACAAA
AAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCCACATAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCCGTCTTCAATCGCATCAAGCCTTCAAC
TACTCGTCCTTCGGTATTCCAAAGAATGAGTATGACCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAATTGTTT
CCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAA
GTAAACAGTGACAAAAAGCTTCAAAGTATTGTCCCGTCACGGATGAAAAGGAAGTTTTCTGTTCTCATAAATACAAAAGGTTCCTTGAAGTTCGAGGGTTCTTACGATGT
ACACTACTGTGTTGTTCCCTCTTCTTCAAGTTCTCGAAGGTTCTCACATGCTTGCTTCGCTGCAGTTCCTTCTCTCTCCAAGTTCAAAGGGCACTGCGCAGCAGCTTGTT
CCTCCTTTTCTCCAAGATTGAAGGCATGCGTCGCTGTAGACAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTCACTAGTCTATACAAGTGGTGAAATC
ACTGCAAGTGAAGTTGATGACGACTGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGAAGAAACAACCTTGCAAGGGGCATATACCAATGACAAGTTTCTTGTTAAGTACAACCCTCTGTTTGAACTTGATTCTGAAGTAGTGACTGTCATGATGAC
TGAGACAAGAACTATAGAAGAAAGAATGACTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGTCAGA
TTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTTTCAACCTCAACAACCAGTGACTGTGAAGGAACTTTTCTCCAAAACTTTCCACAAA
AAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCCACATAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCCGTCTTCAATCGCATCAAGCCTTCAAC
TACTCGTCCTTCGGTATTCCAAAGAATGAGTATGACCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAATTGTTT
CCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAA
GTAAACAGTGACAAAAAGCTTCAAAGTATTGTCCCGTCACGGATGAAAAGGAAGTTTTCTGTTCTCATAAATACAAAAGGTTCCTTGAAGTTCGAGGGTTCTTACGATGT
ACACTACTGTGTTGTTCCCTCTTCTTCAAGTTCTCGAAGGTTCTCACATGCTTGCTTCGCTGCAGTTCCTTCTCTCTCCAAGTTCAAAGGGCACTGCGCAGCAGCTTGTT
CCTCCTTTTCTCCAAGATTGAAGGCATGCGTCGCTGTAGACAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTCACTAGTCTATACAAGTGGTGAAATC
ACTGCAAGTGAAGTTGATGACGACTGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MASEETTLQGAYTNDKFLVKYNPLFELDSEVVTVMMTETRTIEERMTEMQEHINTLMKAIEEKDSQIEHLKSQIENQHIAESSQTQRSKEFFQPQQPVTVKELFSKTFHK
KEKENFATSYCIHIEEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMTATEEENQCSMSTSTRPSAFQRLIVSTSKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDE
VNSDKKLQSIVPSRMKRKFSVLINTKGSLKFEGSYDVHYCVVPSSSSSRRFSHACFAAVPSLSKFKGHCAAACSSFSPRLKACVAVDKSGDHPCRKLQSSKSLVYTSGEI
TASEVDDDCGDHPCRKLQSSK