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Spg027382 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027382
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:41548966..41550254
RNA-Seq ExpressionSpg027382
SyntenySpg027382
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]9.0e-1756.6Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS RLYGTVCTQ                 VEI+L V DTL   AES  S+SSYF NQ+MSGLH V    FNV  G    +  DDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]9.0e-1741.32Show/hide
Query:  MTEILSPRLYGTVCTQVEIKLLVPDTLPTSAESSRSSSS----------------YFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILS RLYGTVCTQV+I+L +PDTLPTSAESS S+ +                YF NQ+MSGLH V    FNV  G    +  DDV WLHA+FR K A
Subjt:  MTEILSPRLYGTVCTQVEIKLLVPDTLPTSAESSRSSSS----------------YFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQCRDADPSVLKLSRR
          PG  ++ +   +    P +T  S +R   +++ + P++    R  +   GQ       +L L RR
Subjt:  GGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQCRDADPSVLKLSRR

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-1441.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILSPRLYGTVCTQ                 VEI+L VPDTLPTSAESS S+SS +   +   +  V+VE F +       + EDDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP
        AGGPGG +        +    + ++ P Q       S  R +  V SE   R  Q   R +  R +DP
Subjt:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.8e-1743.51Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS RL+GTVCTQ                 VEI+L VPDTLPTS ESS S+SSYF NQ+MSGLH V    FN+       +  DDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ
         GGP G +           P +T    K++  + + + P++    R  +  RGQ
Subjt:  AGGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-1441.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILSPRLYGTVCTQ                 VEI+L VPDTLPTSAESS S+SS +   +   +  V+VE F +       + EDDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP
        AGGPGG +        +    + ++ P Q       S  R +  V SE   R  Q   R +  R +DP
Subjt:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein4.3e-1741.32Show/hide
Query:  MTEILSPRLYGTVCTQVEIKLLVPDTLPTSAESSRSSSS----------------YFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILS RLYGTVCTQV+I+L +PDTLPTSAESS S+ +                YF NQ+MSGLH V    FNV  G    +  DDV WLHA+FR K A
Subjt:  MTEILSPRLYGTVCTQVEIKLLVPDTLPTSAESSRSSSS----------------YFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQCRDADPSVLKLSRR
          PG  ++ +   +    P +T  S +R   +++ + P++    R  +   GQ       +L L RR
Subjt:  GGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQCRDADPSVLKLSRR

A0A5A7VMG9 Reverse transcriptase2.6e-1441.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILSPRLYGTVCTQ                 VEI+L VPDTLPTSAESS S+SS +   +   +  V+VE F +       + EDDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP
        AGGPGG +        +    + ++ P Q       S  R +  V SE   R  Q   R +  R +DP
Subjt:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP

A0A5D3BMJ4 Retrotrans_gag domain-containing protein8.7e-1843.51Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS RL+GTVCTQ                 VEI+L VPDTLPTS ESS S+SSYF NQ+MSGLH V    FN+       +  DDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ
         GGP G +           P +T    K++  + + + P++    R  +  RGQ
Subjt:  AGGPGGAISKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ

A0A5D3DIE3 Retrotrans_gag domain-containing protein4.3e-1756.6Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS RLYGTVCTQ                 VEI+L V DTL   AES  S+SSYF NQ+MSGLH V    FNV  G    +  DDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

A0A5D3DX39 Reverse transcriptase2.6e-1441.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILSPRLYGTVCTQ                 VEI+L VPDTLPTSAESS S+SS +   +   +  V+VE F +       + EDDV WLHA+FRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP
        AGGPGG +        +    + ++ P Q       S  R +  V SE   R  Q   R +  R +DP
Subjt:  AGGPGGAI-------SKFMGDEDVKRPKQTMESFKRSAKRSKVRVPSEANERRQQARKRGQ-CRDADP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCAAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGATTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTT
GGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCCATCTCAAAGTTCATGGGCGACGAGGATGTTAAAAGACCCAAGCAGACCATGGAGAGCTTT
AAAAGAAGTGCCAAGAGGTCAAAGGTTCGAGTCCCAAGCGAAGCAAACGAAAGAAGGCAACAAGCTAGAAAAAGGGGACAATGTCGAGATGCTGATCCTAGCGTCTTGAA
GTTATCACGAAGACACGGGGAAGACAATAGCTTAGCATCGAGACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCAAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGATTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTT
GGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCCATCTCAAAGTTCATGGGCGACGAGGATGTTAAAAGACCCAAGCAGACCATGGAGAGCTTT
AAAAGAAGTGCCAAGAGGTCAAAGGTTCGAGTCCCAAGCGAAGCAAACGAAAGAAGGCAACAAGCTAGAAAAAGGGGACAATGTCGAGATGCTGATCCTAGCGTCTTGAA
GTTATCACGAAGACACGGGGAAGACAATAGCTTAGCATCGAGACACTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIKLLVPDTLPTSAESSRSSSSYFPNQIMSGLHHVYVERFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGAISKFMGDEDVKRPKQTMESF
KRSAKRSKVRVPSEANERRQQARKRGQCRDADPSVLKLSRRHGEDNSLASRH