; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027432 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027432
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:40758454..40769106
RNA-Seq ExpressionSpg027432
SyntenySpg027432
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]1.4e-2046.96Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H +EP+TW+  KDLLYDYYFP T+KD+K  +   L  R  +V  Y +     ++FA DL+ T   KIKRF+RGL + I+G + L+ PTT+A A+KGAL++
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLHWDVG
         K+V +K Q    VG
Subjt:  YKNVSKKVQLHWDVG

XP_022155341.1 uncharacterized protein LOC111022474 [Momordica charantia]7.2e-1738.03Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H + PVTW++FKDLLY+YYFP TV+++K  +   L      V  Y +     ++F    + T + KI +FI  LR EI+G L LKEPTT+A A++ AL++
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLH------WDVGGKQRAREFDMAKEEVDDADAV
         K + +              GG  RAR F + + +V+ A+AV
Subjt:  YKNVSKKVQLH------WDVGGKQRAREFDMAKEEVDDADAV

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]1.8e-2046.96Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H + PVTW++FKDLLYDYY+P+TVKD K  +   L+     V  Y +     ++FA +L+ T   KIKRF++GLR+ IRG + L+ P T+A A++GALI+
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLHWDVG
         K+VS +VQ   +VG
Subjt:  YKNVSKKVQLHWDVG

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]4.2e-1744.14Show/hide
Query:  PVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALIIYKNV
        P+ W++FK+LLYDYY+P+TVKD K  +   L      V  Y +     ++FA +L+ T   KIKRF++GLR+ IRG + L+ PTT+A A++GAL++ K+V
Subjt:  PVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALIIYKNV

Query:  SKKVQLHWDVG
        S K     +VG
Subjt:  SKKVQLHWDVG

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]5.5e-1742.61Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H + P+TW++FKDLLYDYY+P T+KD K  +          V  Y +     + FA +L+ T   KIKRF++GLR+ IRG + L+ P T+A A++G LI+
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLHWDVG
          +VS  VQ   +VG
Subjt:  YKNVSKKVQLHWDVG

TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196036.8e-2146.96Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H +EP+TW+  KDLLYDYYFP T+KD+K  +   L  R  +V  Y +     ++FA DL+ T   KIKRF+RGL + I+G + L+ PTT+A A+KGAL++
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLHWDVG
         K+V +K Q    VG
Subjt:  YKNVSKKVQLHWDVG

A0A6J1DQJ4 uncharacterized protein LOC1110228858.9e-2146.96Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H + PVTW++FKDLLYDYY+P+TVKD K  +   L+     V  Y +     ++FA +L+ T   KIKRF++GLR+ IRG + L+ P T+A A++GALI+
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLHWDVG
         K+VS +VQ   +VG
Subjt:  YKNVSKKVQLHWDVG

A0A6J1DRF5 uncharacterized protein LOC1110224743.5e-1738.03Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H + PVTW++FKDLLY+YYFP TV+++K  +   L      V  Y +     ++F    + T + KI +FI  LR EI+G L LKEPTT+A A++ AL++
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLH------WDVGGKQRAREFDMAKEEVDDADAV
         K + +              GG  RAR F + + +V+ A+AV
Subjt:  YKNVSKKVQLH------WDVGGKQRAREFDMAKEEVDDADAV

A0A6J1DUM2 uncharacterized protein LOC1110232472.1e-1744.14Show/hide
Query:  PVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALIIYKNV
        P+ W++FK+LLYDYY+P+TVKD K  +   L      V  Y +     ++FA +L+ T   KIKRF++GLR+ IRG + L+ PTT+A A++GAL++ K+V
Subjt:  PVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALIIYKNV

Query:  SKKVQLHWDVG
        S K     +VG
Subjt:  SKKVQLHWDVG

A0A6J1DYU5 uncharacterized protein LOC1110255172.7e-1742.61Show/hide
Query:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII
        H + P+TW++FKDLLYDYY+P T+KD K  +          V  Y +     + FA +L+ T   KIKRF++GLR+ IRG + L+ P T+A A++G LI+
Subjt:  HNDEPVTWSKFKDLLYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALII

Query:  YKNVSKKVQLHWDVG
          +VS  VQ   +VG
Subjt:  YKNVSKKVQLHWDVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGTATCGCGACGCTGTCCTTGCAGTGTCTCGATGTTAGGCGATTTTCAGAACTTCCAGCTGTGGATTGGGCTTCTTTTCTTGGGCCAACTTCAATTCTTTTTGG
GTTTTATCTCCATGATACTTTGAACAGAGCTTGCCGGAGAAGACGTTCTGAGGGAGTGTTGGCCGACGACTCGCTGTCACCGCCGCTCGAGCCTGCTGCTGCTGAAGGAG
AAGATGCTGCTACCTGCTACTGTGTTGTCGCGTGCCGCCGTAGAGAGAGCAACCAGAGGAGACTCCTATCGTCGGACAAGAAAGGGGAAATGCTGCCGGTGATGGATGAT
CGGACTGTAGTAAGGAAGAAGAAAAAGGATGGCTGCTGTCGGCTACTACTTGTGGAGAAGAAAAGAAAACAGAGGAAGAGCTGGGATTTACAAAGAAATGCGACCGCATT
TCTGAAAAGGAAAAATGAAATGCAACTGCATTTATGGAAAAACAGAGGTCGTTCTGAGTCGTCCGCGGGTCACTTTGCATGCTATGTGAGTTTGATCTCGAAAGGAACAG
GCGATATCGGTTCTCATAAAGGTTGCATTCGTGAATTATCTATGTCGAAGTCGAGTCACAGAAATGTGCATAACGATGAGCCAGTGACTTGGTCAAAGTTCAAAGATCTC
CTGTATGATTATTACTTTCCAGATACTGTCAAGGATGACAAAGGAAACCAAATTTTTGCACTTGACACAAGGCAACATGTTGTTCGTTACTACAGCCAGGACATAAAACC
CAACACGCAATTCGCTCCAGACCTGGTCAGCACTCCTGAGTGGAAGATTAAAAGATTTATTAGGGGACTACGAGAGGAAATTCGAGGTTCATTGGCCTTGAAGGAACCTA
CCACTTTTGCTGTAGCTCTCAAGGGCGCTTTGATTATATATAAGAACGTCTCTAAGAAAGTTCAACTTCACTGGGATGTTGGAGGTAAGCAAAGAGCTCGAGAGTTTGAT
ATGGCAAAGGAAGAGGTGGATGATGCTGATGCAGTTGCTCTAGAACGCGTTGAGTTAGAGCCATGCAGTATCTGCTTTTTATATCCTCATCGTTGCGCCAAAGTTCCAGA
TCCAAGTGAGACCAAGATCTTGAGAGTCAAGAACTCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGTATCGCGACGCTGTCCTTGCAGTGTCTCGATGTTAGGCGATTTTCAGAACTTCCAGCTGTGGATTGGGCTTCTTTTCTTGGGCCAACTTCAATTCTTTTTGG
GTTTTATCTCCATGATACTTTGAACAGAGCTTGCCGGAGAAGACGTTCTGAGGGAGTGTTGGCCGACGACTCGCTGTCACCGCCGCTCGAGCCTGCTGCTGCTGAAGGAG
AAGATGCTGCTACCTGCTACTGTGTTGTCGCGTGCCGCCGTAGAGAGAGCAACCAGAGGAGACTCCTATCGTCGGACAAGAAAGGGGAAATGCTGCCGGTGATGGATGAT
CGGACTGTAGTAAGGAAGAAGAAAAAGGATGGCTGCTGTCGGCTACTACTTGTGGAGAAGAAAAGAAAACAGAGGAAGAGCTGGGATTTACAAAGAAATGCGACCGCATT
TCTGAAAAGGAAAAATGAAATGCAACTGCATTTATGGAAAAACAGAGGTCGTTCTGAGTCGTCCGCGGGTCACTTTGCATGCTATGTGAGTTTGATCTCGAAAGGAACAG
GCGATATCGGTTCTCATAAAGGTTGCATTCGTGAATTATCTATGTCGAAGTCGAGTCACAGAAATGTGCATAACGATGAGCCAGTGACTTGGTCAAAGTTCAAAGATCTC
CTGTATGATTATTACTTTCCAGATACTGTCAAGGATGACAAAGGAAACCAAATTTTTGCACTTGACACAAGGCAACATGTTGTTCGTTACTACAGCCAGGACATAAAACC
CAACACGCAATTCGCTCCAGACCTGGTCAGCACTCCTGAGTGGAAGATTAAAAGATTTATTAGGGGACTACGAGAGGAAATTCGAGGTTCATTGGCCTTGAAGGAACCTA
CCACTTTTGCTGTAGCTCTCAAGGGCGCTTTGATTATATATAAGAACGTCTCTAAGAAAGTTCAACTTCACTGGGATGTTGGAGGTAAGCAAAGAGCTCGAGAGTTTGAT
ATGGCAAAGGAAGAGGTGGATGATGCTGATGCAGTTGCTCTAGAACGCGTTGAGTTAGAGCCATGCAGTATCTGCTTTTTATATCCTCATCGTTGCGCCAAAGTTCCAGA
TCCAAGTGAGACCAAGATCTTGAGAGTCAAGAACTCTCTTTAG
Protein sequenceShow/hide protein sequence
MDSIATLSLQCLDVRRFSELPAVDWASFLGPTSILFGFYLHDTLNRACRRRRSEGVLADDSLSPPLEPAAAEGEDAATCYCVVACRRRESNQRRLLSSDKKGEMLPVMDD
RTVVRKKKKDGCCRLLLVEKKRKQRKSWDLQRNATAFLKRKNEMQLHLWKNRGRSESSAGHFACYVSLISKGTGDIGSHKGCIRELSMSKSSHRNVHNDEPVTWSKFKDL
LYDYYFPDTVKDDKGNQIFALDTRQHVVRYYSQDIKPNTQFAPDLVSTPEWKIKRFIRGLREEIRGSLALKEPTTFAVALKGALIIYKNVSKKVQLHWDVGGKQRAREFD
MAKEEVDDADAVALERVELEPCSICFLYPHRCAKVPDPSETKILRVKNSL