; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg027435 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027435
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold7:43172050..43179773
RNA-Seq ExpressionSpg027435
SyntenySpg027435
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6734747.1 hypothetical protein I3842_01G285500 [Carya illinoinensis]1.9e-2658.72Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS
        FKQND E LYEAWERYK+++RRCPQH  PDWLQ Q+FYNGLN  T+ ++D    GT +S TA  A  LLEEMAS +YQWP ER   KKV  I+EL+   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS

Query:  LKVQMASLT
        L  Q+A+L+
Subjt:  LKVQMASLT

KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]1.9e-2658.72Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS
        FKQND E LYEAWERYK+++RRCPQH  PDWLQ Q+FYNGLN  T+ ++D    GT +S TA  A  LLEEMAS +YQWP ER   KKV  I+EL+   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS

Query:  LKVQMASLT
        L  Q+A+L+
Subjt:  LKVQMASLT

KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]4.3e-2657.8Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS
        FKQND E LYEAWERYK+++RRCPQH  PDWLQ Q+FYNGLN  T+ ++D    GT +S TA  A  LLEEMAS +YQWP ER   KKV  I++L+   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS

Query:  LKVQMASLT
        L  Q+A+L+
Subjt:  LKVQMASLT

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]9.2e-2962.5Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVER----IPIKKVEIYELDE
        F+Q +DEQLYEAWERYK++LRRCPQH YPDWLQ QLFYNGL S TK +LD    G+  S  A  A  +LE++A+TSY WP ER    IP K   +YE+DE
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVER----IPIKKVEIYELDE

Query:  SNSLKVQMASLT
         NSLK QMASLT
Subjt:  SNSLKVQMASLT

XP_023903214.1 uncharacterized protein LOC112015077 [Quercus suber]9.5e-2657.8Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS
        F+QND E LYEAWERYK+++R CPQH  PDWLQ Q+FYNGLN  T+ ++D    GT +S TA  A  LLEEMAS +YQWP ER   KKV  I+EL+   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS

Query:  LKVQMASLT
        L  Q+ASL+
Subjt:  LKVQMASLT

TrEMBL top hitse value%identityAlignment
A0A2I4G4Q3 uncharacterized protein LOC1090047125.1e-2555.96Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKV-EIYELDESNS
        FKQND E LYEAWE YK+++RRCPQH  PDWLQ Q+FYNGLN  T+ ++D    GT +  T   A  LLEEMAS +YQWP+ER   KKV  I+EL+   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKV-EIYELDESNS

Query:  LKVQMASLT
        L  Q+A+L+
Subjt:  LKVQMASLT

A0A3S3N117 Retrotrans_gag domain-containing protein9.0e-2248.62Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS
        F QN+ E LYEAWERYKE+LR+CP H  P W+Q Q FYNGL S T+  +D    GT +  +   A EL+EEMA+ +YQWP + +  KK++ ++ELD  ++
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS

Query:  LKVQMASLT
        L  Q+A+L+
Subjt:  LKVQMASLT

A0A6J0ZYV0 uncharacterized protein LOC1104134132.0e-2153.21Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKK-VEIYELDESNS
        F Q D E LYEAWER+KE+LRRCP H  PDWLQ Q FYNGL    K ++D    G  +S  A +A  LLEEMAS +YQWP ER   +K V  YE+D   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKK-VEIYELDESNS

Query:  LKVQMASLT
        L  Q+A+L+
Subjt:  LKVQMASLT

A0A6J1DU19 uncharacterized protein LOC1110243617.4e-2442.17Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS
        F++ D EQL+E WERYKE+LR+CPQH   +WLQ Q+FYNGLN  T+ +LD    GT +S T  NA  LL++MA  S+QWP ER   KKV  +YE+DE +S
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVE-IYELDESNS

Query:  LKVQMASLTT----------------------------TPRFCIHTRSSREKKSNLKEIVALFIKE
        LK Q+ +LT                             T      T    EKKS+L++++  FI E
Subjt:  LKVQMASLTT----------------------------TPRFCIHTRSSREKKSNLKEIVALFIKE

A0A6P9E7J9 uncharacterized protein LOC1183442386.9e-2254.13Show/hide
Query:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKK-VEIYELDESNS
        FKQND E LYEA ERYK+++R CPQH  PDWLQ Q+F NGLN  T+ ++D+   GT +S T   A  LLEEMAS + QWP ER   KK V I+EL+   +
Subjt:  FKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKK-VEIYELDESNS

Query:  LKVQMASLT
        L  Q A+L+
Subjt:  LKVQMASLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAAGCAGAACGATGACGAGCAACTTTACGAAGCGTGGGAGCGGTATAAGGAAATGTTAAGGAGATGCCCTCAACACATTTATCCAGACTGGCTTCAGGCACAGTT
ATTTTATAATGGGCTTAATAGTTTCACAAAAATTGTTTTAGATATGTATGTAGATGGAACTTTCATTTCCAATACGGCAAACAATGCAAAGGAACTATTGGAAGAAATGG
CGTCGACAAGCTACCAGTGGCCCGTAGAGAGGATCCCGATTAAAAAGGTTGAAATTTATGAGTTGGACGAATCAAACTCGTTGAAAGTGCAAATGGCTTCCCTGACCACC
ACCCCCAGGTTTTGCATCCACACCAGGTCATCAAGAGAAAAAAAGAGTAACCTGAAGGAGATTGTGGCACTCTTCATCAAGGAACAAAAGCTGAAGGATCTATCAGATGA
AGAAAGAAGGAAGAAAGAGAAAGAGAGCAAGGATGAAGACGGATGGGCTAAGACAGAGAAAACCTCCAAGGATAGGAAAACAGAGGAAATGCTGGAATTTACCCAAAAAT
GCGACCGCAATTCTGAGAAAACAGAGGCAGTTCCGAGTCGTTTTGAACGAGTGTTCTTCGCACCTAACCGGCTCCGTGAGGACCTTGTCTTCTTCAAGCGCCGGCCGTTC
CCCGCTGTCCAAGTCTCCGGCGAGCAAGCTCCAGCAACTCCGACGTGTTCGTGCTGCGGTGGTCGTGGTTTCGTCGGCGACTTGAGGAGTGTGCAGACCGTGGACGCGGA
CAACAGCATTCAGGGGCGTTTTTCTGCATTTCCGGCGATTGTTCTGTTAGACGCGGTACCCATAGCGTTTGGAGGTTTAACCGTCGATTTGGAGCGAAATTGGAACCCGA
ACAGCAAGTTTAAAGTTATGTTTTGCCACGAGTCTCCCTTACCCTTCAGTTTCTTCTTGCGCCGCCAGCACCCGTGGGCTTCATCTCCATCGATCTCTCTCTCTCGTTCT
TCCTCGCGTGACCAGCCTGCCGCCGTGAGTTCTTCTCCGGCATTCCTCCCCTCGCGTGTTCGCCACCAGCAGCTGACCCACGAAAAAATCGTTCTCTTCGTGTGGGCTGG
CTTGAGTTCTGTTCCGGCGTGTTCCGGCTCTCTTGTGCCGTCTTGGGTTCGAAATCATTCTTGCCTTGTGACCCATCATCCATTGAGCCTTAAACTTGAACAACCAGTGC
CTAGGGTCTCTAAGCAAGTGGTTTTAAACCTCTTTGCTTGCTGGACAGCACGTGTTCGAGGTCTTTCAGACGCTGAACGTTCGGGCTCCTTAGGCTCTTCCGGTTCGTCT
TGTTGTTTTTTAGGTTGCTTAGGAGCGCTTAAGGGTCGGTATGATGAGTCTATAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATACTTTTCTAAGTCATCGGTGCGC
CTTGGGTACAAATGTTCAAGGGGCGATGCACAGTTCGGGGCCTTGGATACAAATGGTCAAGGGTCGAACGTCGAGCTTCGTAGAGAGCATTGTGGCCCTGGGTACAAATG
GTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCATTTTGTAGGTTATGAGGACTGCGTGGACCATGGTGATGTGGAGGAG
GCATGCGAGGAAGGACCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTAAGCAGAACGATGACGAGCAACTTTACGAAGCGTGGGAGCGGTATAAGGAAATGTTAAGGAGATGCCCTCAACACATTTATCCAGACTGGCTTCAGGCACAGTT
ATTTTATAATGGGCTTAATAGTTTCACAAAAATTGTTTTAGATATGTATGTAGATGGAACTTTCATTTCCAATACGGCAAACAATGCAAAGGAACTATTGGAAGAAATGG
CGTCGACAAGCTACCAGTGGCCCGTAGAGAGGATCCCGATTAAAAAGGTTGAAATTTATGAGTTGGACGAATCAAACTCGTTGAAAGTGCAAATGGCTTCCCTGACCACC
ACCCCCAGGTTTTGCATCCACACCAGGTCATCAAGAGAAAAAAAGAGTAACCTGAAGGAGATTGTGGCACTCTTCATCAAGGAACAAAAGCTGAAGGATCTATCAGATGA
AGAAAGAAGGAAGAAAGAGAAAGAGAGCAAGGATGAAGACGGATGGGCTAAGACAGAGAAAACCTCCAAGGATAGGAAAACAGAGGAAATGCTGGAATTTACCCAAAAAT
GCGACCGCAATTCTGAGAAAACAGAGGCAGTTCCGAGTCGTTTTGAACGAGTGTTCTTCGCACCTAACCGGCTCCGTGAGGACCTTGTCTTCTTCAAGCGCCGGCCGTTC
CCCGCTGTCCAAGTCTCCGGCGAGCAAGCTCCAGCAACTCCGACGTGTTCGTGCTGCGGTGGTCGTGGTTTCGTCGGCGACTTGAGGAGTGTGCAGACCGTGGACGCGGA
CAACAGCATTCAGGGGCGTTTTTCTGCATTTCCGGCGATTGTTCTGTTAGACGCGGTACCCATAGCGTTTGGAGGTTTAACCGTCGATTTGGAGCGAAATTGGAACCCGA
ACAGCAAGTTTAAAGTTATGTTTTGCCACGAGTCTCCCTTACCCTTCAGTTTCTTCTTGCGCCGCCAGCACCCGTGGGCTTCATCTCCATCGATCTCTCTCTCTCGTTCT
TCCTCGCGTGACCAGCCTGCCGCCGTGAGTTCTTCTCCGGCATTCCTCCCCTCGCGTGTTCGCCACCAGCAGCTGACCCACGAAAAAATCGTTCTCTTCGTGTGGGCTGG
CTTGAGTTCTGTTCCGGCGTGTTCCGGCTCTCTTGTGCCGTCTTGGGTTCGAAATCATTCTTGCCTTGTGACCCATCATCCATTGAGCCTTAAACTTGAACAACCAGTGC
CTAGGGTCTCTAAGCAAGTGGTTTTAAACCTCTTTGCTTGCTGGACAGCACGTGTTCGAGGTCTTTCAGACGCTGAACGTTCGGGCTCCTTAGGCTCTTCCGGTTCGTCT
TGTTGTTTTTTAGGTTGCTTAGGAGCGCTTAAGGGTCGGTATGATGAGTCTATAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATACTTTTCTAAGTCATCGGTGCGC
CTTGGGTACAAATGTTCAAGGGGCGATGCACAGTTCGGGGCCTTGGATACAAATGGTCAAGGGTCGAACGTCGAGCTTCGTAGAGAGCATTGTGGCCCTGGGTACAAATG
GTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCATTTTGTAGGTTATGAGGACTGCGTGGACCATGGTGATGTGGAGGAG
GCATGCGAGGAAGGACCTTAG
Protein sequenceShow/hide protein sequence
MFKQNDDEQLYEAWERYKEMLRRCPQHIYPDWLQAQLFYNGLNSFTKIVLDMYVDGTFISNTANNAKELLEEMASTSYQWPVERIPIKKVEIYELDESNSLKVQMASLTT
TPRFCIHTRSSREKKSNLKEIVALFIKEQKLKDLSDEERRKKEKESKDEDGWAKTEKTSKDRKTEEMLEFTQKCDRNSEKTEAVPSRFERVFFAPNRLREDLVFFKRRPF
PAVQVSGEQAPATPTCSCCGGRGFVGDLRSVQTVDADNSIQGRFSAFPAIVLLDAVPIAFGGLTVDLERNWNPNSKFKVMFCHESPLPFSFFLRRQHPWASSPSISLSRS
SSRDQPAAVSSSPAFLPSRVRHQQLTHEKIVLFVWAGLSSVPACSGSLVPSWVRNHSCLVTHHPLSLKLEQPVPRVSKQVVLNLFACWTARVRGLSDAERSGSLGSSGSS
CCFLGCLGALKGRYDESIKQVLGAWGRANTFLSHRCALGTNVQGAMHSSGPWIQMVKGRTSSFVESIVALGTNGQGTVRLEGSVLESHVRAKYEHFVGYEDCVDHGDVEE
ACEEGP