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Spg027445 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027445
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:41870294..41875658
RNA-Seq ExpressionSpg027445
SyntenySpg027445
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAU90333.1 Putative gag and pol polyprotein, identical [Solanum demissum]5.5e-0552.31Show/hide
Query:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALY--EDMGLILKYTH
        RFRK+ P PQANVTEEPFVA+ITDI MV+ V+GW           +SGA  +   D     KYTH
Subjt:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALY--EDMGLILKYTH

ABI34306.1 Polyprotein, putative [Solanum demissum]7.2e-0552.31Show/hide
Query:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALY--EDMGLILKYTH
        RFRK+ P PQANVTEEPFVA+ITDI MV+ V+GW           +SGA  +   D     KYTH
Subjt:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALY--EDMGLILKYTH

KAF3643063.1 Linoleate 13S-lipoxygenase 2-1, chloroplastic [Capsicum annuum]2.7e-0455.1Show/hide
Query:  KVRFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW---STLDRFYLYE
        +++F+K+ P PQANVTEEPFV +ITDI MV+ V+GW   S ++R   YE
Subjt:  KVRFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW---STLDRFYLYE

PRQ35572.1 putative RNA-directed DNA polymerase [Rosa chinensis]7.2e-0547.54Show/hide
Query:  FRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALYEDMGLILKYT
        +RK+E +PQA+VTEEP+VAMITD+ MVQ+VEGW         +C +   +  D     KYT
Subjt:  FRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALYEDMGLILKYT

XP_016548445.1 PREDICTED: uncharacterized protein LOC107848247 [Capsicum annuum]7.9e-0470.59Show/hide
Query:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW
        +FRK+ P PQ NVTEE FVAMI DIYMV+ V+GW
Subjt:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW

TrEMBL top hitse value%identityAlignment
A0A2N9JB76 Uncharacterized protein2.0e-0579.41Show/hide
Query:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW
        +FRK+E VPQANVTEEP VAMITD+ MVQ VEGW
Subjt:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW

A0A7N2L531 Uncharacterized protein9.1e-0647.5Show/hide
Query:  NPRKMSSIGGGVPYTTPVCSRSCWFCRPRLPQLLQIHCGCHVK--VRFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW
        NP K  +   G P +    +RSC+ C              H+    +FRK+E VPQANVTEEP VAMITDI MVQ VEGW
Subjt:  NPRKMSSIGGGVPYTTPVCSRSCWFCRPRLPQLLQIHCGCHVK--VRFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW

A0A7N2N1S1 Integrase catalytic domain-containing protein1.6e-0582.35Show/hide
Query:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW
        +FRK+E VPQANVTEEP VAMITDI MVQ VEGW
Subjt:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW

A0A7N2R982 CCHC-type domain-containing protein9.1e-0647.5Show/hide
Query:  NPRKMSSIGGGVPYTTPVCSRSCWFCRPRLPQLLQIHCGCHVK--VRFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW
        NP K  +   G P +    +RSC+ C              H+    +FRK+E VPQANVTEEP VAMITDI MVQ VEGW
Subjt:  NPRKMSSIGGGVPYTTPVCSRSCWFCRPRLPQLLQIHCGCHVK--VRFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGW

Q60D13 Putative gag and pol polyprotein, identical2.7e-0552.31Show/hide
Query:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALY--EDMGLILKYTH
        RFRK+ P PQANVTEEPFVA+ITDI MV+ V+GW           +SGA  +   D     KYTH
Subjt:  RFRKQEPVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALY--EDMGLILKYTH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTAGGACCAGAAAACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAACACCATATGGTCGGACTCGGCAAGCCCGCTTGCACGGGCCGAGCTCCGTCACCTCCT
TTCGGTCCCTGATGCCCCGGACCGCCCTGGTTCCGCCTGGATGATCCCAAAACACCTCCGAATTCCTAAAAACCCTAGGAAGATGAGCAGCATCGGAGGCGGTGTGCCCT
ACACCACACCGGTGTGCAGCCGTTCTTGCTGGTTTTGCAGGCCACGTCTTCCCCAGCTTCTACAAATTCACTGTGGGTGTCACGTGAAGGTCAGATTTCGGAAACAAGAA
CCTGTACCTCAGGCCAATGTTACCGAAGAGCCATTTGTGGCTATGATTACTGATATTTATATGGTTCAAACTGTTGAAGGATGGAGCACCCTTGACAGATTTTACCTATA
TGAGTGTGAGAGTGGGGCCGCTCTCTATGAGGATATGGGGCTTATTCTCAAATACACTCATGAAATACTGGGATCAGCACAAGGCCGTAACGTGCTAACCAATAAAGCTC
ATGTCAACACCTGGATAATTATGTGTGGATAA
mRNA sequenceShow/hide mRNA sequence
GGTAGGACCAGAAAACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAACACCATATGGTCGGACTCGGCAAGCCCGCTTGCACGGGCCGAGCTCCGTCACCTCCT
TTCGGTCCCTGATGCCCCGGACCGCCCTGGTTCCGCCTGGATGATCCCAAAACACCTCCGAATTCCTAAAAACCCTAGGAAGATGAGCAGCATCGGAGGCGGTGTGCCCT
ACACCACACCGGTGTGCAGCCGTTCTTGCTGGTTTTGCAGGCCACGTCTTCCCCAGCTTCTACAAATTCACTGTGGGTGTCACGTGAAGGTCAGATTTCGGAAACAAGAA
CCTGTACCTCAGGCCAATGTTACCGAAGAGCCATTTGTGGCTATGATTACTGATATTTATATGGTTCAAACTGTTGAAGGATGGAGCACCCTTGACAGATTTTACCTATA
TGAGTGTGAGAGTGGGGCCGCTCTCTATGAGGATATGGGGCTTATTCTCAAATACACTCATGAAATACTGGGATCAGCACAAGGCCGTAACGTGCTAACCAATAAAGCTC
ATGTCAACACCTGGATAATTATGTGTGGATAA
Protein sequenceShow/hide protein sequence
GRTRKPTQRKTGPKGRANTIWSDSASPLARAELRHLLSVPDAPDRPGSAWMIPKHLRIPKNPRKMSSIGGGVPYTTPVCSRSCWFCRPRLPQLLQIHCGCHVKVRFRKQE
PVPQANVTEEPFVAMITDIYMVQTVEGWSTLDRFYLYECESGAALYEDMGLILKYTHEILGSAQGRNVLTNKAHVNTWIIMCG