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Spg027480 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027480
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC5 isoform X1
Genome locationscaffold13:20588564..20593798
RNA-Seq ExpressionSpg027480
SyntenySpg027480
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136590.1 DNA-directed RNA polymerase III subunit RPC5 [Momordica charantia]1.1e-0678.95Show/hide
Query:  KKVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        ++VRV+PS+GEV+VDLNVDIESNNYDSKA G+LQ+KKQ
Subjt:  KKVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
XP_022929283.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata]1.1e-0681.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
XP_022929289.1 DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucurbita moschata]1.1e-0681.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
XP_022985072.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima]1.1e-0681.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
XP_023552355.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo]1.1e-0681.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
TrEMBL top hitse value%identityAlignment
A0A6J1C4C6 DNA-directed RNA polymerase III subunit RPC55.1e-0778.95Show/hide
Query:  KKVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        ++VRV+PS+GEV+VDLNVDIESNNYDSKA G+LQ+KKQ
Subjt:  KKVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
A0A6J1EMD6 DNA-directed RNA polymerase III subunit RPC5 isoform X15.1e-0781.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
A0A6J1ENB5 DNA-directed RNA polymerase III subunit RPC5 isoform X25.1e-0781.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
A0A6J1JAC5 DNA-directed RNA polymerase III subunit RPC5 isoform X25.1e-0781.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
A0A6J1JCH8 DNA-directed RNA polymerase III subunit RPC5 isoform X15.1e-0781.08Show/hide
Query:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
        +VRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Subjt:  KVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTATTTGTGCAGGGATTTTTGGGGAGAGAGTTGTGGTCATTTGTTCGCTGTCACTAGTTTTGATAAGATTGAGGTTGAGAAGAAGGTGAGAGTTCAACCTAGTAC
TGGAGAAGTGCAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAGTAAAGCTAATGGCAATTTGCAAATAAAGAAGCAGGCTCAACCTCACCAGACAATTG
TAGATAGGCTAACTCTGCAGATGGCAGAAGCTGCCCAAGCGGTTGTTGAGGAACATGATTTGTTGCTTAAGGGATTGTGGAATGACAATGGGTTTGGTAGTAGGAGTAGG
ACTGAGTTAATTTGCATCCCTTTCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTATTTGTGCAGGGATTTTTGGGGAGAGAGTTGTGGTCATTTGTTCGCTGTCACTAGTTTTGATAAGATTGAGGTTGAGAAGAAGGTGAGAGTTCAACCTAGTAC
TGGAGAAGTGCAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAGTAAAGCTAATGGCAATTTGCAAATAAAGAAGCAGGCTCAACCTCACCAGACAATTG
TAGATAGGCTAACTCTGCAGATGGCAGAAGCTGCCCAAGCGGTTGTTGAGGAACATGATTTGTTGCTTAAGGGATTGTGGAATGACAATGGGTTTGGTAGTAGGAGTAGG
ACTGAGTTAATTTGCATCCCTTTCTCATGA
Protein sequenceShow/hide protein sequence
MIYLCRDFWGESCGHLFAVTSFDKIEVEKKVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQAQPHQTIVDRLTLQMAEAAQAVVEEHDLLLKGLWNDNGFGSRSR
TELICIPFS