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Spg027503 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027503
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold13:20637658..20645323
RNA-Seq ExpressionSpg027503
SyntenySpg027503
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050143.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0767.92Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIKQ+TSVFDRI+PSTTRSSVFQR+SM    EE+   TS  TR S F+RLS
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0767.92Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIKQRTSVFDRI+PSTTRSSVFQR+SM    EE+   TS  TR S F+RL+
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

KAA0051497.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-0761.67Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLSYRDKAGY
        S EIKQRTSVFDRI+P TTRSSVFQR+SM    EE+   TS  TR S F+RLS      Y
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLSYRDKAGY

TYK16492.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0767.92Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIKQRTSVFDRI+P TTRSSVFQR+SM    EE+  LTS   R S F+RLS
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-0766.04Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIK+RTS+FDRI+PSTTRSSVFQR+SM    EE+   TS  TR S F+RLS
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

TrEMBL top hitse value%identityAlignment
A0A5A7U2K7 Retrotransposon gag protein6.4e-0867.92Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIKQ+TSVFDRI+PSTTRSSVFQR+SM    EE+   TS  TR S F+RLS
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

A0A5A7UA77 Retrotransposon gag protein6.4e-0867.92Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIKQRTSVFDRI+PSTTRSSVFQR+SM    EE+   TS  TR S F+RL+
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

A0A5A7UAU4 Retrotransposon gag protein4.9e-0861.67Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLSYRDKAGY
        S EIKQRTSVFDRI+P TTRSSVFQR+SM    EE+   TS  TR S F+RLS      Y
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLSYRDKAGY

A0A5A7V8H3 Retrotransposon gag protein1.1e-0764.15Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIK+RTS+FDRI+PSTTRSSVF+R+SM    EE+  LTS  T+ S F+RLS
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

A0A5D3CY57 Retrotransposon gag protein6.4e-0867.92Show/hide
Query:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS
        S EIKQRTSVFDRI+P TTRSSVFQR+SM    EE+  LTS   R S F+RLS
Subjt:  SKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATATCAATGTAGAAGAGGAGGTGGATCAAAGGAAATCAAGCAAAGGACTTCTGTCTTTGATCGCATTGAGCCTTCAACTACTCGATCTTCGGTCTTCCAAAGAAT
GAGTATGGTTGTAGCAGGAGAAGAAGATCCAAGCTTGACGTCCGCTATCACTCGACATTCAGTTTTCCAAAGACTAAGCTATAGGGATAAGGCTGGATACCTTATCTTGG
TGACACTATGGATACGACCCGCTTTGTATTTTGATACAAACGCATTGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTCCATTAGGT
CCCACCGGTAGCTCTATAAGGGCGTTGAGCTTGTCTTTGCATGGAGGAGGTCTTTATAAGGAGCTTGAATCAGATTCAAAAGGGAGAGAGCTTTTACCTACTAACATGCA
TGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTGTTGGAAGGTTGCCCAGTCAGTTTCGGGGTCAAAACAACCGGTTAGGT
GTGAAGAAGACTCGTCAACAACGACCCGCGTGCGACTCGGAACGGCCTCTGATTTTCCAGAAATGCGGTCGCATTTCAATTTTGCCTTTGCATTTCTGGGGAATTACAGC
TTTTCCTCTAGCATCCTTGTTGTCATCTTTACCTTCGTTCTAGCTTATCGACACTTTGTGGTGAAGATATCTACCTACGAGCAAAGTTCACAAACTCGGAATGATACTCA
CTTCCCTAGGGCTTCCGATGCTGGTGAAGGCCCTGTGAAAGGAGTATGCTGGGATGGAGAGGCTACATTCGGCCCTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTATATCAATGTAGAAGAGGAGGTGGATCAAAGGAAATCAAGCAAAGGACTTCTGTCTTTGATCGCATTGAGCCTTCAACTACTCGATCTTCGGTCTTCCAAAGAAT
GAGTATGGTTGTAGCAGGAGAAGAAGATCCAAGCTTGACGTCCGCTATCACTCGACATTCAGTTTTCCAAAGACTAAGCTATAGGGATAAGGCTGGATACCTTATCTTGG
TGACACTATGGATACGACCCGCTTTGTATTTTGATACAAACGCATTGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTCCATTAGGT
CCCACCGGTAGCTCTATAAGGGCGTTGAGCTTGTCTTTGCATGGAGGAGGTCTTTATAAGGAGCTTGAATCAGATTCAAAAGGGAGAGAGCTTTTACCTACTAACATGCA
TGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTGTTGGAAGGTTGCCCAGTCAGTTTCGGGGTCAAAACAACCGGTTAGGT
GTGAAGAAGACTCGTCAACAACGACCCGCGTGCGACTCGGAACGGCCTCTGATTTTCCAGAAATGCGGTCGCATTTCAATTTTGCCTTTGCATTTCTGGGGAATTACAGC
TTTTCCTCTAGCATCCTTGTTGTCATCTTTACCTTCGTTCTAGCTTATCGACACTTTGTGGTGAAGATATCTACCTACGAGCAAAGTTCACAAACTCGGAATGATACTCA
CTTCCCTAGGGCTTCCGATGCTGGTGAAGGCCCTGTGAAAGGAGTATGCTGGGATGGAGAGGCTACATTCGGCCCTGATTGA
Protein sequenceShow/hide protein sequence
MLYQCRRGGGSKEIKQRTSVFDRIEPSTTRSSVFQRMSMVVAGEEDPSLTSAITRHSVFQRLSYRDKAGYLILVTLWIRPALYFDTNALIQRVHVVDMRVGVSCAMSPLG
PTGSSIRALSLSLHGGGLYKELESDSKGRELLPTNMHALGVKLNVLSAFDLQLLPHVCWKVAQSVSGSKQPVRCEEDSSTTTRVRLGTASDFPEMRSHFNFAFAFLGNYS
FSSSILVVIFTFVLAYRHFVVKISTYEQSSQTRNDTHFPRASDAGEGPVKGVCWDGEATFGPD