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Spg027505 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027505
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:20481494..20492158
RNA-Seq ExpressionSpg027505
SyntenySpg027505
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.7e-1135.61Show/hide
Query:  PLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK
        P     WKLN +AAW++   + GIG I RD  G V+ A       +      E+MAI EG++      C  I +ESD+L+ I+ ++   + + EI  L++
Subjt:  PLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK

Query:  EIRQLSSAFNIISFSFISRNCNKIADAIAKRA
        EI Q+     I+S   ISR  NK+A  +A+RA
Subjt:  EIRQLSSAFNIISFSFISRNCNKIADAIAKRA

XP_030945849.1 uncharacterized protein LOC115970343 [Quercus lobata]2.7e-1134.92Show/hide
Query:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS
        K+N DAA    P   GIG + R+  G V GAL+S   M  +    E +A ++ ++ ++ LG      E D+   IN +   +      G+ + +IR LSS
Subjt:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS

Query:  AFNIISFSFISRNCNKIADAIAKRAK
         F  + F F++R CN +ADA+AK+AK
Subjt:  AFNIISFSFISRNCNKIADAIAKRAK

XP_030964152.1 uncharacterized protein LOC115985344 [Quercus lobata]2.0e-1131.34Show/hide
Query:  PLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK
        P ++ ++K+N DAA   +  S GIG I RD  G V+GAL+    M  +    E +A    +K +  +G   +  E D+   IN I+ +   +   G++++
Subjt:  PLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK

Query:  EIRQLSSAFNIISFSFISRNCNKIADAIAKRAKS
        +I  ++S F ++ F ++ R CN +ADA+AK+A +
Subjt:  EIRQLSSAFNIISFSFISRNCNKIADAIAKRAKS

XP_031107832.1 uncharacterized protein LOC116012436 [Ipomoea triloba]7.0e-1234.93Show/hide
Query:  LWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQL
        ++KLNVDAA   +    G G   RD  G +V A ++ Y   F P  AE M + E +K   S+  +N+ VESD LQ IN IN    + +    ++ ++R+L
Subjt:  LWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQL

Query:  SSAFNIISFSFISRNCNKIADAIAKRAKSKCCNKSGQYADSISLPF
        +S F  I F F+ R+ N++A  +A+ A S       + +D  S+PF
Subjt:  SSAFNIISFSFISRNCNKIADAIAKRAKSKCCNKSGQYADSISLPF

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.6e-1134.67Show/hide
Query:  NSSQNLSDTPLNDKLW--------KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTIN
        +SS   S T  +D+ W        KLNVDAAW+ SP S+G  AI RD  G +     S  D  + PP+AE   +++G++L+  +    I V+SD    I+
Subjt:  NSSQNLSDTPLNDKLW--------KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTIN

Query:  FINGSSELRNEIGSLVKEIRQLSSAFNIISFSFISRNCNKIADAIAKRAK
                 + +   ++EI ++S  F  I+F++I RN NK+AD +AKR +
Subjt:  FINGSSELRNEIGSLVKEIRQLSSAFNIISFSFISRNCNKIADAIAKRAK

TrEMBL top hitse value%identityAlignment
A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein1.9e-1031.16Show/hide
Query:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS
        KLN D A +++  ++G+GA+ R+ LG +VGAL   +     P   E +A+ EG++ S  LG  N+ VE D L  IN ++ +     EIG++++ +R L  
Subjt:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS

Query:  AFNIISFSFISRNCNKIADAIAKRA----KSKCCNKSG
         F  +++  + +  N++A  +A+ A    +S  C + G
Subjt:  AFNIISFSFISRNCNKIADAIAKRA----KSKCCNKSG

A0A5P1EL44 Uncharacterized protein1.9e-1035.43Show/hide
Query:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS
        KLNVD A        G GA+ RD  G  VG L +      +P   E +A++ G+   + +G   + +E D+L  IN +NGS E  +  G L+ E + L S
Subjt:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS

Query:  AFNIISFSFISRNCNKIADAIAKRAKS
         F   S+ F+ R CN+ A  +A+RA S
Subjt:  AFNIISFSFISRNCNKIADAIAKRAKS

A0A6J1CP26 uncharacterized protein LOC1110134123.7e-1135.61Show/hide
Query:  PLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK
        P     WKLN +AAW++   + GIG I RD  G V+ A       +      E+MAI EG++      C  I +ESD+L+ I+ ++   + + EI  L++
Subjt:  PLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK

Query:  EIRQLSSAFNIISFSFISRNCNKIADAIAKRA
        EI Q+     I+S   ISR  NK+A  +A+RA
Subjt:  EIRQLSSAFNIISFSFISRNCNKIADAIAKRA

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-1034.67Show/hide
Query:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS
        KLN DAA + +  ST  G I RD    +V A +       +P +AE+  I+EG+K + +    ++ VESD+L  I  I      R +  + V EI+ L+ 
Subjt:  KLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSS

Query:  AFNIISFSFISRNCNKIADAIAKRAKSKCCNKSGQYADSISLPFWGQDRV
         F  ISFS  SR CN+ A  +AK       + S  YA   + P W  D V
Subjt:  AFNIISFSFISRNCNKIADAIAKRAKSKCCNKSGQYADSISLPFWGQDRV

A0A7N2R7I7 RNase H domain-containing protein1.3e-1132.82Show/hide
Query:  KLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTIN-FINGSSELRNEIGSLVKEIR
        K++K+N DAA   S    G+G I RD  G  +GAL+    +D +    E +A    ++ ++ +G + + +E D+   I+  +NG+ +L +  G+++ +I 
Subjt:  KLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTIN-FINGSSELRNEIGSLVKEIR

Query:  QLSSAFNIISFSFISRNCNKIADAIAKRAKS
          +SAF  I+F+++SR CN +ADA+A++A S
Subjt:  QLSSAFNIISFSFISRNCNKIADAIAKRAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein6.5e-0834.35Show/hide
Query:  VDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFT-----------PPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLV
        VDAAWQ      G G + +          TSH + + T           P  AE  AI   M  ++ L  +++ V SD+   ++ +N +  L NEI  L+
Subjt:  VDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFT-----------PPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLV

Query:  KEIRQLSSAFNIISFSFISRNCNKIADAIAK
         EIR + + F  ISF FI R  N IADA AK
Subjt:  KEIRQLSSAFNIISFSFISRNCNKIADAIAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0731.09Show/hide
Query:  DAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSSAFNI
        DAAW+      G G + R+   +      S       P MAE +A+   ++ + S+G   +S+ SD+ Q I  I   S    E   ++ +I  LS  F  
Subjt:  DAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVKEIRQLSSAFNI

Query:  ISFSFISRNCNKIADAIAK
        +SFSF+ R+ N++AD +AK
Subjt:  ISFSFISRNCNKIADAIAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCCTCCCAAAATTTGAGCGACACTCCACTAAATGACAAACTCTGGAAGCTTAATGTTGATGCAGCTTGGCAATCCTCCCCTCCCTCAACCGGTATTGGCGCCAT
TTGCAGAGATCCCCTTGGAGTGGTTGTAGGTGCACTGACTTCTCACTATGATATGGATTTTACCCCTCCAATGGCTGAGATGATGGCAATTATCGAAGGAATGAAGCTCA
GTATATCATTGGGATGCAATAATATCTCGGTTGAATCAGACAACCTTCAAACAATCAATTTCATAAATGGGTCCTCAGAGCTAAGGAATGAAATTGGTTCGTTAGTAAAG
GAAATCAGGCAGTTATCCTCAGCTTTCAATATTATTTCCTTCTCTTTTATTTCAAGGAACTGTAATAAAATAGCTGATGCTATTGCAAAAAGAGCAAAATCAAAATGTTG
TAATAAGAGTGGCCAATATGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACT
TTAGGGAAGCAGATGAGTACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGGGTGCAACTGTCCATTAGG
TCCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCCTCCCAAAATTTGAGCGACACTCCACTAAATGACAAACTCTGGAAGCTTAATGTTGATGCAGCTTGGCAATCCTCCCCTCCCTCAACCGGTATTGGCGCCAT
TTGCAGAGATCCCCTTGGAGTGGTTGTAGGTGCACTGACTTCTCACTATGATATGGATTTTACCCCTCCAATGGCTGAGATGATGGCAATTATCGAAGGAATGAAGCTCA
GTATATCATTGGGATGCAATAATATCTCGGTTGAATCAGACAACCTTCAAACAATCAATTTCATAAATGGGTCCTCAGAGCTAAGGAATGAAATTGGTTCGTTAGTAAAG
GAAATCAGGCAGTTATCCTCAGCTTTCAATATTATTTCCTTCTCTTTTATTTCAAGGAACTGTAATAAAATAGCTGATGCTATTGCAAAAAGAGCAAAATCAAAATGTTG
TAATAAGAGTGGCCAATATGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACT
TTAGGGAAGCAGATGAGTACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGGGTGCAACTGTCCATTAGG
TCCCACTGA
Protein sequenceShow/hide protein sequence
MNSSQNLSDTPLNDKLWKLNVDAAWQSSPPSTGIGAICRDPLGVVVGALTSHYDMDFTPPMAEMMAIIEGMKLSISLGCNNISVESDNLQTINFINGSSELRNEIGSLVK
EIRQLSSAFNIISFSFISRNCNKIADAIAKRAKSKCCNKSGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADEYTREGLTSRYWSISVDTENMSAVRRVQLSIR
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