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Spg027513 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027513
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCold-inducible RNA binding protein
Genome locationscaffold11:3311388..3312413
RNA-Seq ExpressionSpg027513
SyntenySpg027513
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607208.1 Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia]2.2e-1558.95Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSE   I                         L ++   IVDGRLIFVEFAKT  HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
XP_008457543.1 PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]6.4e-1556.38Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKS
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+   I                         L ++   IVDGRLIFVEFAKTR+HGVD  S
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKS
XP_022949004.1 cold-inducible RNA-binding protein B-like [Cucurbita moschata]4.4e-1660Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSE   I                         L ++   IVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
XP_023523197.1 cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo]1.8e-1764.21Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEG-----------------TYISL------LHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
        MANRLG+QLFISRLSSYTTIERLESLFSPFGSVSE                  T+ SL      LH++   IVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEG-----------------TYISL------LHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
XP_038895198.1 small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]3.0e-1762.11Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
        MANR+GSQLFISRLSSYTTIERLESLFSPFGSVSE   I                         L ++   IVDGRLIFVEFAKTRRHGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
TrEMBL top hitse value%identityAlignment
A0A0A0KQ26 Cold-inducible RNA binding protein6.0e-1154.12Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKT
        MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SE   I                         L ++   IVDGRLIFVEFAKT
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKT
A0A1S3C5W5 cold-inducible RNA-binding protein B3.1e-1556.38Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKS
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+   I                         L ++   IVDGRLIFVEFAKTR+HGVD  S
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKS
A0A6J1DM71 small RNA-binding protein 11, chloroplastic8.7e-1050Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGV
        MAN +GSQ+FISRLSSYTTIERL+SLFS FG+VSE   +                         + ++   IVDGRLIFVEFA TR  GV
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGV
A0A6J1GBJ9 cold-inducible RNA-binding protein B-like2.1e-1660Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSE   I                         L ++   IVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
A0A6J1KF23 cold-inducible RNA-binding protein B-like2.1e-1660Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSE   I                         L ++   IVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.3e-0944.05Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAK
        MA R+ +QLF+SRLS+YTT + L  LFSPFG + E   I                         L SL   IVDGRLIFVE AK
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYI-----------------------SLLHSLFQFIVDGRLIFVEFAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTAC
ATACATATCTCTCCTTCATTCTCTGTTTCAATTTATAGTTGATGGAAGGTTGATTTTCGTTGAATTTGCGAAGACTAGGAGACATGGGGTTGATGCTAAATCTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTAC
ATACATATCTCTCCTTCATTCTCTGTTTCAATTTATAGTTGATGGAAGGTTGATTTTCGTTGAATTTGCGAAGACTAGGAGACATGGGGTTGATGCTAAATCTAGATAA
Protein sequenceShow/hide protein sequence
MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEGTYISLLHSLFQFIVDGRLIFVEFAKTRRHGVDAKSR