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Spg027520 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027520
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase III domain-containing protein
Genome locationscaffold11:4087179..4091613
RNA-Seq ExpressionSpg027520
SyntenySpg027520
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572281.1 Endoribonuclease Dicer-like 2, partial [Cucurbita argyrosperma subsp. sororia]8.9e-0760Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
        +IE YPLHSNG+IK PKIL DIVES IG VF DSN IDTV T  +   + + TL T   H
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
KAG7011897.1 Ribonuclease 3-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-0760Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
        +IE YPLHSNG+IK PKIL DIVES IG VF DSN IDTV T  +   + + TL T   H
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
XP_004144598.1 ribonuclease 3-like protein 3 [Cucumis sativus]1.6e-0885Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
        SIE YPLHSNG+IK PK+L DIVESTIG VFADSNFIDTV
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
XP_022952611.1 ribonuclease 3-like protein 3 [Cucurbita moschata]8.9e-0760Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
        +IE YPLHSNG+IK PKIL DIVES IG VF DSN IDTV T  +   + + TL T   H
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
XP_038888348.1 ribonuclease 3-like protein 3 [Benincasa hispida]1.8e-0766.67Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCTEAYNDVMFTLST
        SIE YPLHSNG+IK PK+L DIVESTIG VFADSN I+TV  + + D+M  L T
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCTEAYNDVMFTLST
TrEMBL top hitse value%identityAlignment
A0A0A0K1J8 RNase III domain-containing protein7.8e-0985Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
        SIE YPLHSNG+IK PK+L DIVESTIG VFADSNFIDTV
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
A0A565BHF1 RNase III domain-containing protein2.4e-0567.5Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
        +IE YPLHS G++K+PK L DIVESTIG +F DSN I+TV
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
A0A6J1C375 ribonuclease 3-like protein 32.1e-0657.63Show/hide
Query:  IEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
        ++ YPLHSNG+IK PKIL DIVESTIG VF DSN +DTV T      + + TL T   H
Subjt:  IEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
A0A6J1GKQ4 ribonuclease 3-like protein 34.3e-0760Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
        +IE YPLHSNG+IK PKIL DIVES IG VF DSN IDTV T  +   + + TL T   H
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
A0A6J1I0C1 ribonuclease 3-like protein 35.6e-0760Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
        +IE YPLHSNG+IK PKIL DIVES IG VF DSN IDTV T  +   + + TL T   H
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCT--EAYNDVMFTLSTYCIH
SwissProt top hitse value%identityAlignment
Q69KJ0 Ribonuclease 3-like protein 33.9e-0538.33Show/hide
Query:  IEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCTEAYN---DVMFTLSTYCIH
        +  YP+HSNG++  PK+L D+VES IG ++ DSNF   +  + +    D + +L T   H
Subjt:  IEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTVCTEAYN---DVMFTLSTYCIH
Arabidopsis top hitse value%identityAlignment
AT4G15417.1 RNAse II-like 15.9e-0962.5Show/hide
Query:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV
        ++E YPLHSNG++K+PK+L DIVESTIG +F D N  +TV
Subjt:  SIEAYPLHSNGIIKIPKILDDIVESTIGVVFADSNFIDTV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGGAAGCGGACCCCGGAGGAGAGCGCGGCCCAATCCCATGCTCGGCCTCAGCCCAAGACCAAGGCCAACCACTCGACCCACTCGTATGGGTCGAGTTCCTTCCG
CCTCCGTTCGGTCCCTGCTGCCCCAGTTCGCCCCGGCATCGGAGTGCAGGTGGCCTACACCACACCGGTGTGCAGTAGTTCTTACTGGTCTTGCAGGTCACGTCTTTCCC
GTCTTCAACAAATTCACTGCTGGTGTTACGTGAAGGTCAGCATAGAGGCATATCCATTGCATTCGAATGGAATAATCAAAATTCCAAAAATTCTAGACGACATTGTTGAA
TCAACTATTGGAGTTGTATTTGCCGATAGCAACTTCATCGACACTGTTTGCACAGAGGCATATAACGATGTCATGTTCACATTATCTACTTATTGTATACATGGTCATGG
CATCTGTCGCACTGACATACCAATAGAGAAACAATTTCCTGAATTTGTACCAGATGAATTTCACCACAATGTCAAAGACATGCCTCCTATCATTCAAACACAAGATGGTG
TTGATTCTTCCACTCAGGTGATGGTGTCGACCCTTGGTTCACAATTTCATACGCCGTCATATTATGCTTCTGAGACTAGCCCCTCATCGTCACATGCTCATGGACATGTA
GAGCATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGACCAGGAAGCGGACCCCGGAGGAGAGCGCGGCCCAATCCCATGCTCGGCCTCAGCCCAAGACCAAGGCCAACCACTCGACCCACTCGTATGGGTCGAGTTCCTTCCG
CCTCCGTTCGGTCCCTGCTGCCCCAGTTCGCCCCGGCATCGGAGTGCAGGTGGCCTACACCACACCGGTGTGCAGTAGTTCTTACTGGTCTTGCAGGTCACGTCTTTCCC
GTCTTCAACAAATTCACTGCTGGTGTTACGTGAAGGTCAGCATAGAGGCATATCCATTGCATTCGAATGGAATAATCAAAATTCCAAAAATTCTAGACGACATTGTTGAA
TCAACTATTGGAGTTGTATTTGCCGATAGCAACTTCATCGACACTGTTTGCACAGAGGCATATAACGATGTCATGTTCACATTATCTACTTATTGTATACATGGTCATGG
CATCTGTCGCACTGACATACCAATAGAGAAACAATTTCCTGAATTTGTACCAGATGAATTTCACCACAATGTCAAAGACATGCCTCCTATCATTCAAACACAAGATGGTG
TTGATTCTTCCACTCAGGTGATGGTGTCGACCCTTGGTTCACAATTTCATACGCCGTCATATTATGCTTCTGAGACTAGCCCCTCATCGTCACATGCTCATGGACATGTA
GAGCATGGATAG
Protein sequenceShow/hide protein sequence
MTRKRTPEESAAQSHARPQPKTKANHSTHSYGSSSFRLRSVPAAPVRPGIGVQVAYTTPVCSSSYWSCRSRLSRLQQIHCWCYVKVSIEAYPLHSNGIIKIPKILDDIVE
STIGVVFADSNFIDTVCTEAYNDVMFTLSTYCIHGHGICRTDIPIEKQFPEFVPDEFHHNVKDMPPIIQTQDGVDSSTQVMVSTLGSQFHTPSYYASETSPSSSHAHGHV
EHG