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Spg027559 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027559
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S acidic ribosomal protein P3-2
Genome locationscaffold11:3743013..3745509
RNA-Seq ExpressionSpg027559
SyntenySpg027559
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148320.1 60S acidic ribosomal protein P3-2 [Cucumis sativus]9.2e-0456.67Show/hide
Query:  SCCYHAVTNFVGGGGF-IGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +     GGGF  GGGA          AAAEAP EKKEE+KEESDDEDLGL LFD
Subjt:  SCCYHAVTNFVGGGGF-IGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
XP_008451467.1 PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]2.0e-0661.02Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +    GGGGFIGGGA          AAAEAP EKKEE+KEESDDEDLGL LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
XP_022929782.1 60S acidic ribosomal protein P3-2-like [Cucurbita moschata]2.4e-0453.33Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA-----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +     GGGFIGGG            AAAEAP EKKEE+KEESDD+DLG  LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA-----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
XP_038889531.1 60S acidic ribosomal protein P3-2 [Benincasa hispida]9.9e-0657.38Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA------------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +    GGGGFIGGG             AAAEAP EKKEE+KEESDDEDLGL LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA------------AAAEAPVEKKEEMKEESDDEDLGLLLFD
TrEMBL top hitse value%identityAlignment
A0A0A0LJB2 Uncharacterized protein4.5e-0456.67Show/hide
Query:  SCCYHAVTNFVGGGGF-IGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +     GGGF  GGGA          AAAEAP EKKEE+KEESDDEDLGL LFD
Subjt:  SCCYHAVTNFVGGGGF-IGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
A0A1S3BRK9 60S acidic ribosomal protein P3-29.6e-0761.02Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +    GGGGFIGGGA          AAAEAP EKKEE+KEESDDEDLGL LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
A0A5D3BNN6 60S acidic ribosomal protein P3-29.6e-0761.02Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +    GGGGFIGGGA          AAAEAP EKKEE+KEESDDEDLGL LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
A0A6J1ENN1 60S acidic ribosomal protein P3-2-like1.2e-0453.33Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA-----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +     GGGFIGGG            AAAEAP EKKEE+KEESDD+DLG  LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA-----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
A0A6J1KB28 60S acidic ribosomal protein P3-2-like1.2e-0453.33Show/hide
Query:  SCCYHAVTNFVGGGGFIGGGA-----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
        S  +  +     GGGFIGGG            AAAEAP EKKEE+KEESDD+DLG  LFD
Subjt:  SCCYHAVTNFVGGGGFIGGGA-----------AAAEAPVEKKEEMKEESDDEDLGLLLFD
SwissProt top hitse value%identityAlignment
P56724 60S acidic ribosomal protein P31.5e-0443.33Show/hide
Query:  FNIDRTVLAGAPLLDLRALGILAKRFCV---SCCYHAVTNFVGGGGFIGGGA--------AAAEAP--VEKKEEMKEESDDEDLGLLLFD
        + + R ++A A   D  A G+ +    V   S  +  +   VGGG  IGGGA        AAAEAP   EKKEE KEES+D DLG  LFD
Subjt:  FNIDRTVLAGAPLLDLRALGILAKRFCV---SCCYHAVTNFVGGGGFIGGGA--------AAAEAP--VEKKEEMKEESDDEDLGLLLFD
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATACTTTCTCTCGATGCCGTAAGACGGCGTCGGCAAAAACGCTACCTCTCTCGACGTCATCTTAGCGACGTCGAGAGAAATGCTCTCTCTTCTCCCAACCAAGT
CGTCGTTGCCTGTCCCACCGTCTCCTCGCCTACCGTCGTCTCGTGCGCCGCCGCCTGTCCCGCCGTCGTCTCGTCCGTCGCCGCCTCACTCGCCGTCGACTGTGCTTTTG
AAGTTGAAATCGTTCTGCTTGATGTTGGATTTCATTCTTTTTGGTATAAGAACAGAACCAAACTGTTCAACATAGACCGAACTGTACTTGCAGGTGCTCCTTTGTTGGAC
TTGAGGGCCTTAGGCATTTTGGCTAAAAGATTTTGTGTATCTTGTTGCTATCATGCAGTTACAAATTTCGTTGGTGGTGGCGGATTCATTGGCGGTGGAGCAGCTGCTGC
AGAAGCCCCAGTTGAGAAGAAGGAAGAGATGAAGGAAGAGAGTGATGACGAAGACCTTGGCCTTTTACTTTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATACTTTCTCTCGATGCCGTAAGACGGCGTCGGCAAAAACGCTACCTCTCTCGACGTCATCTTAGCGACGTCGAGAGAAATGCTCTCTCTTCTCCCAACCAAGT
CGTCGTTGCCTGTCCCACCGTCTCCTCGCCTACCGTCGTCTCGTGCGCCGCCGCCTGTCCCGCCGTCGTCTCGTCCGTCGCCGCCTCACTCGCCGTCGACTGTGCTTTTG
AAGTTGAAATCGTTCTGCTTGATGTTGGATTTCATTCTTTTTGGTATAAGAACAGAACCAAACTGTTCAACATAGACCGAACTGTACTTGCAGGTGCTCCTTTGTTGGAC
TTGAGGGCCTTAGGCATTTTGGCTAAAAGATTTTGTGTATCTTGTTGCTATCATGCAGTTACAAATTTCGTTGGTGGTGGCGGATTCATTGGCGGTGGAGCAGCTGCTGC
AGAAGCCCCAGTTGAGAAGAAGGAAGAGATGAAGGAAGAGAGTGATGACGAAGACCTTGGCCTTTTACTTTTTGATTAG
Protein sequenceShow/hide protein sequence
MEILSLDAVRRRRQKRYLSRRHLSDVERNALSSPNQVVVACPTVSSPTVVSCAAACPAVVSSVAASLAVDCAFEVEIVLLDVGFHSFWYKNRTKLFNIDRTVLAGAPLLD
LRALGILAKRFCVSCCYHAVTNFVGGGGFIGGGAAAAEAPVEKKEEMKEESDDEDLGLLLFD