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Spg027566 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027566
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold11:4304924..4306477
RNA-Seq ExpressionSpg027566
SyntenySpg027566
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.7e-1436.65Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK----------------------------IQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFG
        + +YT T VP EQVLMEI+N  LLK+P R+ ++  +R K                            ++         P+ T++G   + P REIRTI G
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK----------------------------IQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFG

Query:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
        G  E  S RKRK   REAR   E   +Y V+       +EF+E EA  +  PHNDALV+TL
Subjt:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

XP_022143483.1 uncharacterized protein LOC111013355 [Momordica charantia]3.1e-1036.62Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNP---DRRDKIQSSSTSPGSR-----PRPTKDG-RDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR
        + +YTPT VP  QV+M+I++  LLK   R+K+     D +++++        +     P+ T++G  D + P REIRTI GG  E    RKR A  RE R
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNP---DRRDKIQSSSTSPGSR-----PRPTKDG-RDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR

Query:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
               +Y   +A+    +EF+E E   +  PHNDALV+TL
Subjt:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

XP_022157676.1 uncharacterized protein LOC111024332 [Momordica charantia]1.8e-1034.29Show/hide
Query:  PAHATTYYQYTPTAVPQEQVLMEIRNTG---LLKFPGRIKSNPDRRDKIQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR
        P  +  Y ++TPT +P  ++L  I ++G   LLK P +++  P+RR K ++SS       + ++    + + P  I TIFGG + G S  KRK +AREAR
Subjt:  PAHATTYYQYTPTAVPQEQVLMEIRNTG---LLKFPGRIKSNPDRRDKIQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR

Query:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVV
             R +  +       P+ F  A+   +H PHNDALV+
Subjt:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVV

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.6e-1437.27Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG
        + +YTPT VP EQVLMEI++  LLK+P R+K++  +R K                         G             P+ T++G   + P REIRTI G
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG

Query:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
        G  E  S RKRKA  REAR   E   +Y  +       +EF+E EA  +  PHNDALV+ L
Subjt:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.6e-1437.89Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG
        + +YTPT VP EQVLMEI++  LLK+P R+K    +R K                         G             P+ T++G  ++ P REIRTI G
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG

Query:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
        G  E  S+RKRKA  REAR   E   +Y  +       +EF+E EA  +  PHNDALV+TL
Subjt:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.3e-1436.65Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK----------------------------IQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFG
        + +YT T VP EQVLMEI+N  LLK+P R+ ++  +R K                            ++         P+ T++G   + P REIRTI G
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK----------------------------IQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFG

Query:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
        G  E  S RKRK   REAR   E   +Y V+       +EF+E EA  +  PHNDALV+TL
Subjt:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

A0A6J1CQU1 uncharacterized protein LOC1110133551.5e-1036.62Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNP---DRRDKIQSSSTSPGSR-----PRPTKDG-RDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR
        + +YTPT VP  QV+M+I++  LLK   R+K+     D +++++        +     P+ T++G  D + P REIRTI GG  E    RKR A  RE R
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNP---DRRDKIQSSSTSPGSR-----PRPTKDG-RDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR

Query:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
               +Y   +A+    +EF+E E   +  PHNDALV+TL
Subjt:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

A0A6J1DWY0 uncharacterized protein LOC1110252932.2e-1437.27Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG
        + +YTPT VP EQVLMEI++  LLK+P R+K++  +R K                         G             P+ T++G   + P REIRTI G
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG

Query:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
        G  E  S RKRKA  REAR   E   +Y  +       +EF+E EA  +  PHNDALV+ L
Subjt:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

A0A6J1DYL6 uncharacterized protein LOC1110257857.6e-1537.89Show/hide
Query:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG
        + +YTPT VP EQVLMEI++  LLK+P R+K    +R K                         G             P+ T++G  ++ P REIRTI G
Subjt:  YYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDK-----------------IQSSSTSPG-----------SRPRPTKDGRDKEEPPREIRTIFG

Query:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL
        G  E  S+RKRKA  REAR   E   +Y  +       +EF+E EA  +  PHNDALV+TL
Subjt:  GTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTL

A0A6J1DYW5 uncharacterized protein LOC1110243328.7e-1134.29Show/hide
Query:  PAHATTYYQYTPTAVPQEQVLMEIRNTG---LLKFPGRIKSNPDRRDKIQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR
        P  +  Y ++TPT +P  ++L  I ++G   LLK P +++  P+RR K ++SS       + ++    + + P  I TIFGG + G S  KRK +AREAR
Subjt:  PAHATTYYQYTPTAVPQEQVLMEIRNTG---LLKFPGRIKSNPDRRDKIQSSSTSPGSRPRPTKDGRDKEEPPREIRTIFGGTAEGGSSRKRKAIAREAR

Query:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVV
             R +  +       P+ F  A+   +H PHNDALV+
Subjt:  FEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCACGGCAGCTCCCCCTCTGTTTTTCCTCTGTTTTTCTCCTTCAATCAGCTCCCAATCCCTCCAGCTGGGAATGCCACATCAATTAATGAAGCCTTCCACGTG
TAAATCAGCTCCAGCTGCTATTCTGCCTTTTCCAGCTCATGCTACAACATATTATCAATACACACCAACTGCTGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACA
CAGGTCTTCTAAAGTTTCCTGGGAGGATAAAATCGAATCCCGATAGAAGAGACAAGATCCAGAGTTCGTCGACGAGCCCGGGGTCGAGGCCGAGGCCGACCAAAGATGGT
CGAGACAAAGAAGAACCCCCACGAGAGATTAGAACCATCTTTGGAGGAACAGCTGAAGGAGGTTCAAGTAGGAAGAGGAAAGCTATTGCTAGGGAAGCAAGGTTCGAACC
AGAATATCGAGGTATGTACTCTGTCCATCTAGCAAAGGCACACCCCCCTTTAGAGTTCACTGAGGCTGAGGCCGTGAGCATTCATCAACCACATAATGATGCCCTGGTGG
TCACTCTCATGTATTATCAGCGGGATCCTCCCGGAACTCCGGATTTTTTGGAATATGTTTCAAAACCAATGAAGCTCTACCGATCAAGCACTAGGCAACTGGCTATCCCT
AACTCAGTCACTGGCGTTCACCAATACACAATGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTCCACGGCAGCTCCCCCTCTGTTTTTCCTCTGTTTTTCTCCTTCAATCAGCTCCCAATCCCTCCAGCTGGGAATGCCACATCAATTAATGAAGCCTTCCACGTG
TAAATCAGCTCCAGCTGCTATTCTGCCTTTTCCAGCTCATGCTACAACATATTATCAATACACACCAACTGCTGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACA
CAGGTCTTCTAAAGTTTCCTGGGAGGATAAAATCGAATCCCGATAGAAGAGACAAGATCCAGAGTTCGTCGACGAGCCCGGGGTCGAGGCCGAGGCCGACCAAAGATGGT
CGAGACAAAGAAGAACCCCCACGAGAGATTAGAACCATCTTTGGAGGAACAGCTGAAGGAGGTTCAAGTAGGAAGAGGAAAGCTATTGCTAGGGAAGCAAGGTTCGAACC
AGAATATCGAGGTATGTACTCTGTCCATCTAGCAAAGGCACACCCCCCTTTAGAGTTCACTGAGGCTGAGGCCGTGAGCATTCATCAACCACATAATGATGCCCTGGTGG
TCACTCTCATGTATTATCAGCGGGATCCTCCCGGAACTCCGGATTTTTTGGAATATGTTTCAAAACCAATGAAGCTCTACCGATCAAGCACTAGGCAACTGGCTATCCCT
AACTCAGTCACTGGCGTTCACCAATACACAATGATCTAG
Protein sequenceShow/hide protein sequence
MDSTAAPPLFFLCFSPSISSQSLQLGMPHQLMKPSTCKSAPAAILPFPAHATTYYQYTPTAVPQEQVLMEIRNTGLLKFPGRIKSNPDRRDKIQSSSTSPGSRPRPTKDG
RDKEEPPREIRTIFGGTAEGGSSRKRKAIAREARFEPEYRGMYSVHLAKAHPPLEFTEAEAVSIHQPHNDALVVTLMYYQRDPPGTPDFLEYVSKPMKLYRSSTRQLAIP
NSVTGVHQYTMI