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Spg027572 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg027572
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold11:3479829..3481685
RNA-Seq ExpressionSpg027572
SyntenySpg027572
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.9e-2043.06Show/hide
Query:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT
        ++ S+EK   IE+++E W +V RRKK+K +   KES  +R+ +R  K+Q+ K KKK+R+ K V E+ +DF  P   +TLA++FP RFL D Q E   +V 
Subjt:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        CH ++++E++ +P  S E       LS F++ DLLSLPQE KT+
Subjt:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.4e-2043.26Show/hide
Query:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI
        SQEK   IE+++E WT+V RRKK+K +  +KE R +R+ ++  K+Q+ K KKK+R+ K + E+ +DF      +TLA++FP RFL D Q E   +V CH 
Subjt:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        ++ +E++++P  S E      DLS F++ DLLSLPQE K +
Subjt:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]5.1e-0736.81Show/hide
Query:  SLPQ-EAKTVEDVKASDL--KKG---ETSTSLVKPKVVEDEKCSPVLR-------YVPLSQHKKGESPFTECPKSIKGR-KVADINHITVEEVDDSKEEE
        SLPQ   K   D KA  L  K G    T T     K+ E  K S   +        +P+S+   G         + KG+ KV D NHITV+EVD  +E E
Subjt:  SLPQ-EAKTVEDVKASDL--KKG---ETSTSLVKPKVVEDEKCSPVLR-------YVPLSQHKKGESPFTECPKSIKGR-KVADINHITVEEVDDSKEEE

Query:  SVDQRASVFRRIRPPVARASVFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLST
           QR S F RI P VAR  VF+R+ + E E +  Q T++  R SVF+RL++    E+    T
Subjt:  SVDQRASVFRRIRPPVARASVFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLST

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]4.1e-2040.83Show/hide
Query:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI
        S+E+   I+D +E WTLV RRKK+KQ++++KESR +R+ +R  KSQR+K +K  R+  P++E+SE+      PITL ++F   F       ++EIV CH 
Subjt:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKC
        +   +DD  P++S E    P DL S  I DLL+L QEAK   D     LK  + ST    P    D  C
Subjt:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKC

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.3e-2143.06Show/hide
Query:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT
        ++ S  K  SIE++NE W +V RR K+K +  +KES  +R+ +R  K+Q+ K KKK+R+ K V E+ +DF  P   +T+A+ FP RFL D Q E  E++T
Subjt:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        CH ++  E++ +P+ S E      +LS F++ DLLSLPQE KT+
Subjt:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-2145Show/hide
Query:  QEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIV
        QEK  SIE ++E WT+V RRKK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + E+ +DF      +TLA +FP RFL D Q E  E+V CH +
Subjt:  QEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIV

Query:  DMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        D +E++ +P  S E      DL  F++ DLLSLPQE KT+
Subjt:  DMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein3.3e-2043.06Show/hide
Query:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT
        ++ S+EK   IE+++E W +V RRKK+K +   KES  +R+ +R  K+Q+ K KKK+R+ K V E+ +DF  P   +TLA++FP RFL D Q E   +V 
Subjt:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        CH ++++E++ +P  S E       LS F++ DLLSLPQE KT+
Subjt:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

A0A5A7TY01 Ty3-gypsy retrotransposon protein3.0e-2143.06Show/hide
Query:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT
        ++ S  K  SIE++NE W +V RR K+K +  +KES  +R+ +R  K+Q+ K KKK+R+ K V E+ +DF  P   +T+A+ FP RFL D Q E  E++T
Subjt:  MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        CH ++  E++ +P+ S E      +LS F++ DLLSLPQE KT+
Subjt:  CHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

A0A5D3BE72 Ty3-gypsy retrotransposon protein1.8e-2145Show/hide
Query:  QEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIV
        QEK  SIE ++E WT+V RRKK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + E+ +DF      +TLA +FP RFL D Q E  E+V CH +
Subjt:  QEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIV

Query:  DMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        D +E++ +P  S E      DL  F++ DLLSLPQE KT+
Subjt:  DMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

A0A5D3BSG5 Uncharacterized protein6.7e-2143.26Show/hide
Query:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI
        SQEK   IE+++E WT+V RRKK+K +  +KE R +R+ ++  K+Q+ K KKK+R+ K + E+ +DF      +TLA++FP RFL D Q E   +V CH 
Subjt:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV
        ++ +E++++P  S E      DLS F++ DLLSLPQE K +
Subjt:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTV

A0A5D3BSG5 Uncharacterized protein2.5e-0736.81Show/hide
Query:  SLPQ-EAKTVEDVKASDL--KKG---ETSTSLVKPKVVEDEKCSPVLR-------YVPLSQHKKGESPFTECPKSIKGR-KVADINHITVEEVDDSKEEE
        SLPQ   K   D KA  L  K G    T T     K+ E  K S   +        +P+S+   G         + KG+ KV D NHITV+EVD  +E E
Subjt:  SLPQ-EAKTVEDVKASDL--KKG---ETSTSLVKPKVVEDEKCSPVLR-------YVPLSQHKKGESPFTECPKSIKGR-KVADINHITVEEVDDSKEEE

Query:  SVDQRASVFRRIRPPVARASVFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLST
           QR S F RI P VAR  VF+R+ + E E +  Q T++  R SVF+RL++    E+    T
Subjt:  SVDQRASVFRRIRPPVARASVFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLST

A0A5D3BSG5 Uncharacterized protein2.0e-2040.83Show/hide
Query:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI
        S+E+   I+D +E WTLV RRKK+KQ++++KESR +R+ +R  KSQR+K +K  R+  P++E+SE+      PITL ++F   F       ++EIV CH 
Subjt:  SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKC
        +   +DD  P++S E    P DL S  I DLL+L QEAK   D     LK  + ST    P    D  C
Subjt:  VDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAACCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTC
CACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTAGACATGGTGGAAGATGAT
GATGTCCCTGCTAGTTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAACTGTTGAGGATGT
GAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCAGC
ATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGGGAAGGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAA
GAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTTCACA
ACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGAGAGAAGAGAGTACACTTTCAACTCCGGATATCACG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAACCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTC
CACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTAGACATGGTGGAAGATGAT
GATGTCCCTGCTAGTTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAACTGTTGAGGATGT
GAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCAGC
ATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGGGAAGGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAA
GAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTTCACA
ACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGAGAGAAGAGAGTACACTTTCAACTCCGGATATCACG
Protein sequenceShow/hide protein sequence
MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDD
DVPASSSETVASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKCSPVLRYVPLSQHKKGESPFTECPKSIKGRKVADINHITVEEVDDSKEE
ESVDQRASVFRRIRPPVARASVFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLSTPDIT